Candidatus Pelagibacter giovannonii: E5R92_01485
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Entry
E5R92_01485 CDS
T06537
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
peg
Candidatus Pelagibacter giovannonii
Pathway
peg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5R92_01485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peg03019
]
E5R92_01485
Messenger RNA biogenesis [BR:
peg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E5R92_01485
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF3910
Motif
Other DBs
NCBI-ProteinID:
QIZ20458
UniProt:
A0A6H1Q0W3
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All DBs
Position
complement(255126..256781)
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AA seq
551 aa
AA seq
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MKDELLFCPLGGSGEIGMNMNLFAYGKPGEHKWIMVDIGVTFADDTLPGIDLIYPDPGFI
VDKKEDLLGIILTHAHEDHIGAIAHLWPQLKCKIFATPFTAVLIKEKLKEKNIDATNYLK
IVQLNGTVDLDPFKIEYITLTHSILEPNGLRIETPAGVILHTGDWKIDPEPLIGEKINSD
RLKEIGKEGVLAMVCDSTNVFSMGKAGSELDVRKSLLNIMGSLKKRIVMASFASNVARME
TAFYCAEKTGRQISLVGRSMHRIFKAARQCGYLKNVIEPIDAREAKKIAREKIIYLCTGS
QGEPMAALMRISSYTHPDVFIEKDDAVIFSSKIIPGNEKKLYKLQNQLVRDGIEVISEES
EFVHVSGHPNRDDLREMYDWVKPQCAVPVHGEHRHMIEHMKFAHEMKVPHPVQVENGDIV
KLAPGKPHVFDKAPSGRLYLDGNMSVEEDAQSIKDRKNIAANGYMEVTILITAKGNIHKR
PVLTFRGLPVYDADEFIYELEEAIEKTTRTFSIKSKKQEYNLIDALKITCRKCAKELTGK
RPFININLVRI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatgaactattattttgccctttaggagggtctggagaaattggcatgaatatg
aacttgtttgcctatggaaaaccaggtgaacataaatggatcatggttgatataggggtt
acatttgctgatgataccttaccgggaattgatcttatttacccagatcctggatttata
gttgataaaaaagaagatcttttaggaattattttaactcatgcacatgaagatcatata
ggggcaattgcacatctttggcctcaattaaaatgcaaaatttttgcaactccatttact
gcagttttaataaaagaaaaacttaaagaaaagaacattgatgcaactaattatttaaaa
atagttcaattaaatggaacggtagatttagatccttttaaaatagagtacatcacatta
actcactcaattcttgaacctaatggtcttagaattgaaactccagcaggtgtaatacta
catacaggagattggaaaattgacccagaaccattgattggtgaaaaaattaattctgac
agacttaaagaaattggtaaagaaggtgtccttgctatggtttgtgattcaacaaatgta
tttagtatgggaaaagctggttcagagctagatgttagaaaaagtttattaaatattatg
ggtagccttaaaaaaagaattgttatggcttcttttgcatcaaatgttgcacgtatggaa
acagctttttattgtgcagaaaaaaccggtagacaaatatccttagtaggaagatctatg
catagaatatttaaagccgcaagacaatgtggttatttaaaaaatgttattgaacctata
gatgcacgtgaagcaaaaaaaattgctagggaaaaaataatttacctttgtactggtagt
cagggtgagcctatggcagcactaatgagaatttcaagctatactcatccagatgtattt
atcgagaaagatgatgctgttattttttcatctaaaattattccaggtaatgaaaaaaaa
ttatacaaattacaaaatcaattagttagggatggtattgaagttatatcagaggaaagt
gaatttgttcatgtttctggccacccaaatagagatgatctaagagaaatgtatgattgg
gttaaacctcaatgtgcagtccctgttcatggagaacacagacacatgattgaacatatg
aaattcgcacacgaaatgaaagttccacacccggttcaagtagaaaacggtgatattgta
aaattagctccaggtaaaccgcatgtttttgataaagctccaagtggtagactttattta
gatgggaatatgagtgtcgaagaagatgctcaatcaattaaagatagaaaaaatatagct
gctaatggatatatggaggttactattttaattactgcaaagggtaatattcataaaaga
cctgtattaacctttagagggttgcctgtttatgatgctgatgaattcatctatgaatta
gaagaggcaatagaaaaaacaactagaaccttttctataaaaagcaaaaaacaagaatat
aatttaattgatgcattaaaaattacatgtagaaaatgtgccaaagaattgactggtaaa
agaccatttataaatatcaatctagtaagaatctag
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