Candidatus Pelagibacter giovannonii: E5R92_03685
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Entry
E5R92_03685 CDS
T06537
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
peg
Candidatus Pelagibacter giovannonii
Brite
KEGG Orthology (KO) [BR:
peg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
peg03016
]
E5R92_03685
Enzymes [BR:
peg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E5R92_03685
Transfer RNA biogenesis [BR:
peg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E5R92_03685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QIZ20883
UniProt:
A0A6H1Q3D9
LinkDB
All DBs
Position
666216..666827
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AA seq
203 aa
AA seq
DB search
MNIDIKLHKSDLPEDLDLGNIIAVDGEFMGLNVKRDPLCLIQISTGNSDAHIVQLDREKY
DAPNLNKVLSDKKITKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKT
LIKEFMNVDVSKQFQSSDFGGELSPAQLKYCANDVIYLHKIHEELNKILVREKRVDLYKS
CLAFLKTRVDLDLALFKDDIWSH
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgatattaaacttcacaagagtgatctaccagaagatttagatttaggcaat
attatagcagttgatggagaatttatgggtctcaacgttaagcgtgatcctttatgtctt
attcaaatatcgactggtaattctgatgctcatattgtccaacttgatagagaaaaatat
gatgcaccaaacttaaataaagtactttccgacaaaaaaatcacaaaaatatttcattat
ggtagggcggacatggctcacataaaacattacctaaaaacagaaactaataatattctt
gatacaaaaattgcttcgaagttagctagatcctattcagatagtcactccctaaaaaca
ttaattaaagaatttatgaatgtagacgtaagtaaacaatttcaaagttcagattttgga
ggagagctatctccagcacaattaaaatattgtgccaatgatgttatttatttacataaa
attcatgaagaattaaataaaatccttgtaagggaaaaacgagttgatttatataagagc
tgtttagcatttttaaaaactagagttgatcttgatttggctttatttaaagacgatata
tggtctcattaa
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