Candidatus Pelagibacter giovannonii: E5R92_04350
Help
Entry
E5R92_04350 CDS
T06537
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
peg
Candidatus Pelagibacter giovannonii
Pathway
peg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5R92_04350 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peg03019
]
E5R92_04350 (pnp)
03016 Transfer RNA biogenesis [BR:
peg03016
]
E5R92_04350 (pnp)
Enzymes [BR:
peg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
E5R92_04350 (pnp)
Messenger RNA biogenesis [BR:
peg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
E5R92_04350 (pnp)
Transfer RNA biogenesis [BR:
peg03016
]
Prokaryotic type
tRNA degradation factors
E5R92_04350 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
T6PP_N
Motif
Other DBs
NCBI-ProteinID:
QIZ21010
UniProt:
A0A6H1Q3D0
LinkDB
All DBs
Position
complement(788808..790880)
Genome browser
AA seq
690 aa
AA seq
DB search
MFKVYKKEIEVAGKKISLETGKIARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS
VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSAFKNEVQLLPTVISY
DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA
GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE
VKQKLEETFTADLTKAFATIDKQDRSNQISEISDKAKKLFADNENYSDFNVNDELKNLEK
KIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDE
QRLESLDGQHRERFMLHYNFPPFSVGETGRIGTGRREVGHGKLAWRAINSSLPSKEAFPY
TFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDILG
DEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRVHILGEMNKALSE
SRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPDEE
SRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELAPKRVEKVT
DVVKEGDEVKVKVIGFDRGKVKLSMKQAAE
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaagtatataagaaggaaattgaagtagcaggtaagaagataagtttagaaaca
ggtaagatagcaagacaagcagacggagcaattattgcttcatgtggtgaaacagttatt
ttagcaacagtagtaggagcaaaaaaagtaaatccagatatggattattttcctctttct
gtaaactaccaagaaaaatattatgcaggtggtaaaattcctggtggatattttaaaaga
gaagcaagaccaactgaaagtgaacaattgatctcaagattaattgatagacccatcaga
cctttgtttccaagtgcatttaaaaatgaagttcagctgttaccaacagtaatttcatat
gataaagacaatcaaccagatattttagcaattacagcttcttcagcagcactagctatt
tcaggaatgccatttatgggacctgtgggtgcttcaagagttggtttagttgatggaaaa
tacatattaaatccatcaaaagctgagttagaaaactctactttagatttagttgtagcc
ggtactaaagatgctgtgcttatggttgagtcggaaacatcaggcttaaccgaagaagta
atgttagatgcagttaaatttggccatgaaggatttgttccagtaattgagatgatagag
gaacttgcaaaagaatgcagaaaaccagaatggactgttgaaaagaaagatttatctgaa
gttaaacaaaaacttgaggaaacttttacagcagatctaacaaaagcttttgcaacaata
gacaaacaagatagatcaaatcaaatttcagaaatttctgataaagcaaaaaagcttttt
gcagacaatgaaaactattctgattttaacgttaatgacgaattaaaaaatcttgaaaag
aaaattgttagaactgatattcttaaaaataaaaaaagaattgatggcagaggtttagct
gatgtaagagctattgagtgtgaagttggtgttttaccaagaactcacggatcagctcta
tttactagaggtgaaacacaagcgattgttgttactactttaggtacatctgatgacgaa
caaagattagaaagtttagatggacagcatagagaaagatttatgcttcattacaacttc
cctcctttctcagttggtgaaactggaagaattggaactggaagacgtgaagttggtcat
ggaaaattagcatggagagcaattaactcttcattaccttcaaaagaagcattcccatac
acttttagaatagtgtcagagattacagaatctaacggttcttcttcaatggcgagtgtt
tgtggtgcatctcttgcattaatggatgctggagttccaattaaagagccagttgcaggt
attgcaatgggactaattaaagaaggcgatgattttagtgtcttatcagatattttaggt
gatgaagatcatcttggagacatggattttaaagttgctggaactaaagatggaattact
tcacttcaaatggatatcaaaattacaggtattacatttgaaatcatggaacaggcttta
aaacaggctaaagaaggaagagttcatatcttaggtgaaatgaataaagctttaagcgaa
tcaagagccgatgttggtgaacacactcccaaaatggaacaaattactgttgataaaaaa
gacatcgcagctgtgattggaaaaggtggagcaacgattagagagattgttgaaaaatca
ggtgctaaactagatgtaaacgatgaaggtgtggtaactgttgctgctccagacgaagag
tctagaaacattgctatgcaaatgattaaagacatcacagcaaaggctgaactaaataaa
atttattcaggtaaagtaatgaaaattatggaatttggtgcatttgttaacttcttaggt
aaacaagatggtcttgttcacatttcagaacttgctcctaaaagagtagaaaaagttact
gatgttgtcaaagaaggcgatgaagtaaaagttaaagtgattggttttgatagaggtaaa
gttaagctttctatgaaacaagcagctgaataa
DBGET
integrated database retrieval system
