Candidatus Pelagibacter giovannonii: E5R92_06145
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Entry
E5R92_06145 CDS
T06537
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
peg
Candidatus Pelagibacter giovannonii
Brite
KEGG Orthology (KO) [BR:
peg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E5R92_06145 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peg03021
]
E5R92_06145 (rpoD)
Transcription machinery [BR:
peg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E5R92_06145 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
QIZ21363
UniProt:
A0A6H1Q4S8
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All DBs
Position
1141568..1143391
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AA seq
607 aa
AA seq
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MERIITKSFARLMGRGTHRGFITFDELNKSLGKRNLSDENLEQAFMHILDENVALVEKKS
DFKVLRKKENSSKEEGKAIEKSDDPIRMYLREMGGVELLSREGEIAIAKRIEAGKDVMLI
ALAQSPITAQQFVEWDEKLQSDEILVREIIDIDTNYMEDENTGPSAKQRNSGETDKNVEN
NGDDDEFNPTLAAMETEIKPKVLKTVNTLTKEYAKLTKYQKEKLDCILNAESFSAAKEKG
HDKIVSDILENIKSLQLSPSVLEELVQKHYVENKKIVSLEGNLLRLAMDQKIPRNEFIKF
YIGNEINPNLKKFLDTNPMWKQFFSKNKDEFKNIRERLIEISHKLGISVTDYKKIVSRVQ
KGEKESRIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRLILSEFGREATPEELAQK
LRMPLDKVRKVLKISKEPVSLEKPVGDEEDSSLGDFIEDTKALAPLEQAIKSNLGEATTK
ILSTLTPREERVLRMRFGVGMNTDHTLEEVGLQFSVTRERIRQIEAKALRKLKHPSRSKQ
LKSFLES
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
gtggaaagaataattacaaaatcatttgctagacttatgggtcgtgggactcatagagga
tttataacttttgacgagttgaataaatcattaggtaaaagaaatctttcagacgaaaat
ttagaacaagccttcatgcacattcttgatgagaatgtagcactagttgaaaaaaaatct
gattttaaagttttaagaaaaaaagaaaattcatccaaagaagagggtaaggctattgaa
aaaagtgatgaccctataagaatgtatctaagagagatgggtggagtagaactcttgtct
cgtgaaggtgaaattgcaattgccaaaagaatagaagctgggaaagatgtaatgcttata
gcactagcacaaagcccaattactgcacaacaatttgtagaatgggatgaaaaacttcaa
agcgatgaaattttagttagagaaattattgatattgatactaactacatggaagacgaa
aatacaggtccaagtgctaaacaaagaaattctggtgaaactgataaaaatgttgaaaat
aatggagatgacgatgaatttaatccaacgcttgcagcgatggaaactgaaattaaacca
aaagttttaaaaactgttaatactttaacaaaagaatatgcaaaattaaccaagtatcaa
aaagaaaaacttgattgtattttaaatgcagaaagtttctcagcagctaaagaaaaaggg
catgataaaattgtaagtgatattttagaaaatattaaatcattacagttatcaccctct
gtactagaggaattggtccaaaagcactatgtggaaaataaaaaaattgtttcattagaa
ggaaatcttttaagactagcaatggatcaaaaaattccaagaaatgaatttatcaagttt
tatataggcaatgaaattaatccaaatcttaaaaagttcttggatactaaccctatgtgg
aaacagtttttctcaaaaaataaagatgaatttaaaaatataagagagagattaattgag
attagtcataaacttggaatttcagtcactgattataaaaaaatagttagccgagttcaa
aagggtgaaaaggagtctagaattgcgaaaaaagaaatggttgaagcaaacttaagattg
gtaatttcaatagcgaaaaaatatacaaatagaggacttcaatttttagatcttattcaa
gaaggaaatattggccttatgaaagctgtagataaatttgaatacagaagaggttataag
ttttcaacatatgctacttggtggatcagacaagcaatcactagatctattgctgaccaa
gcgcgaacgattagaattccagttcacatgattgaaactattaataaaattgtaagaacc
caaagattaattttaagtgagtttggtagagaggctacacctgaagaactagcacaaaaa
ttaagaatgcctttagacaaagttagaaaagttttaaaaatatcaaaagaacctgtatct
cttgaaaaaccagttggagatgaagaggacagtagtttaggtgattttattgaagataca
aaagcgttagcacctttagaacaagctattaagtcaaatttaggtgaagctacaactaag
attttatcaactttaacacctagagaagaaagagttcttagaatgagatttggtgttgga
atgaatacggatcatacccttgaagaagtaggtctacagttttctgtaacaagagagcgt
attagacagatagaggctaaagctttaagaaaattaaaacacccaagcagatccaaacag
ctaaaaagctttttagaaagttaa
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