Candidatus Pelagibacter giovannonii: E5R92_06275
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Entry
E5R92_06275 CDS
T06537
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
peg
Candidatus Pelagibacter giovannonii
Pathway
peg03420
Nucleotide excision repair
peg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
peg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E5R92_06275
03430 Mismatch repair
E5R92_06275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
peg03400
]
E5R92_06275
Enzymes [BR:
peg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E5R92_06275
DNA repair and recombination proteins [BR:
peg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E5R92_06275
MMR (mismatch excision repair)
Other MMR factors
E5R92_06275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QIZ21385
UniProt:
A0A6H1Q5A0
LinkDB
All DBs
Position
complement(1169424..1171460)
Genome browser
AA seq
678 aa
AA seq
DB search
MINSEYLDNLNNAQKEAVLYLDGPLLIVAGAGSGKTKVLTSRIAHIISEKKAFPNQILSV
TFTNKAAKEMQNRVSSILNSEAIGLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQ
IRLIKNICKAENIDIKQLAPRFILSIIDRWKNKGFYPDEVVINKNDIFERTILPIYKIYQ
QKLSDLNACDFGDLILHVVKILEKNQDIRNIYSNNFKYILVDEYQDTNYIQSRWLNLLSE
KHKNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYKNSKVIRLEENYRSSQNILSVASNLIA
NNQNRVGKTLKTTMEEGDLVKLNCFKNGKDEAIGISDEIEKKLKKKYSFNNIAILVRAIF
QTREFEERFLKIGLPYRILGGTKFYERAEIKDCVAYLRLIHQSKDDLAFDRIVNNPKRAI
GESTIRLIHEFSKVNTVSLEIASKKLIEENLIKPKTKIGLSFFLFLMDKWRNDINIKKIN
HVKLLQLVLDESGYSNMLKNKKDLENENRLENIKELLSAMKDFDNLESFLEHVALATSVD
QDWDGEKVNMMTMHGSKGLEFDVVFLPGWEEGLFPHQKSIEEKGQNGLEEERRLAYVGIT
RAKKKALISFAMNRFYQGNWIDSMASRFIEELPEKFLEKNSFFDDSKDNEEDFEFNQDFE
IEEGTRSPGWIRYQKRIK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgataaactctgaatatttagacaatcttaataatgctcaaaaagaagcggttttatac
cttgatggaccattattgattgttgcaggagctggatctggaaaaacaaaagttctaact
tcaagaattgctcatataatcagtgaaaaaaaggcctttccaaatcaaatcttatcagta
acttttaccaataaagctgcaaaagaaatgcaaaacagagttagttctatattaaattct
gaagctatagggctttcgtggcttgggacctttcattctatatgcgcaaagcttctaaga
aaacacgcacctgcagctggattaacttctaattttacaattattgatacggatgaccaa
ataagattaatcaaaaatatatgtaaagctgaaaatattgacataaaacaattggcacca
agatttattctttcaataattgatagatggaaaaataaagggttctatccagatgaagtc
gttatcaacaaaaatgatatttttgaaagaactatacttcctatctataaaatttatcaa
caaaaattatcagatctaaatgcatgtgactttggtgatttaattttacacgtagttaaa
attttagaaaaaaatcaagacataagaaatatttattcaaataattttaaatatatacta
gtggatgagtaccaagatactaattatatacaaagtagatggcttaatctactctctgaa
aaacataaaaatttgtgttgtgttggagacgatgatcaatctatttatagttggcgtgga
gcagaaataaaaaatttcttggaatttgatcaagtgtataaaaattcaaaggtaataaga
ttagaagaaaattatcgttcttcacaaaatatattatccgttgcttcaaatcttatagct
aataatcaaaatagagttggaaaaactttaaaaacaacaatggaagaaggagatcttgta
aaacttaattgttttaaaaatggaaaagatgaggcaataggaatttctgatgaaattgaa
aagaaacttaaaaaaaaatattcttttaataatattgctattttagttagagctattttt
cagacaagagagtttgaagaaagatttttaaaaattggtttaccttatagaattcttggt
ggaacaaaattttatgaaagagcagaaattaaagattgtgttgcatatttaagattgatt
catcaatcaaaagatgatttggcatttgatcgaatagtgaataatcctaaaagagcaatt
ggtgaaagtacgataagattaatacatgagttttcaaaagtgaacactgttagtttggaa
attgcttccaaaaaattaatagaagaaaatctaattaagcccaaaactaaaattggtctt
agcttttttttattccttatggataagtggcgaaatgacattaatataaaaaaaattaat
catgttaaattattacaattagttttagatgaatctggctattcaaatatgttaaaaaac
aaaaaagacctagaaaatgaaaacagacttgaaaacattaaagaacttttaagtgcgatg
aaagattttgacaatttagaaagttttcttgaacatgttgctcttgctacctcagttgat
caagattgggatggggaaaaagttaacatgatgacaatgcatggatctaaaggacttgaa
tttgatgtggttttcttaccaggctgggaagaaggtctttttccacaccaaaaatctatt
gaagaaaaaggtcaaaatgggcttgaagaggagagaagattggcttacgtgggtataaca
agagctaaaaaaaaggcacttatatcctttgctatgaataggttttatcagggaaattgg
atagacagtatggcttcgagatttattgaagaattaccagaaaaatttttagaaaagaat
tctttttttgacgactctaaagataatgaagaagattttgaatttaatcaagattttgaa
attgaagaagggactagaagtcctggatggatacggtatcagaaaagaattaaatga
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