Planctopirus ephydatiae: Spb1_00440
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Entry
Spb1_00440 CDS
T06220
Symbol
uvrD1
Name
(GenBank) ATP-dependent DNA helicase UvrD1
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
peh
Planctopirus ephydatiae
Pathway
peh03420
Nucleotide excision repair
peh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spb1_00440 (uvrD1)
03430 Mismatch repair
Spb1_00440 (uvrD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
peh03400
]
Spb1_00440 (uvrD1)
Enzymes [BR:
peh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spb1_00440 (uvrD1)
DNA repair and recombination proteins [BR:
peh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spb1_00440 (uvrD1)
MMR (mismatch excision repair)
Other MMR factors
Spb1_00440 (uvrD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
HHH
RecR_HhH
HHH_5
AAA_11
NACHT
DEAD
Motif
Other DBs
NCBI-ProteinID:
QDV28181
UniProt:
A0A518GHW1
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All DBs
Position
complement(47237..49339)
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AA seq
700 aa
AA seq
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MTTDSPQTASPPSVPLADLSRWQQDLNPEQRAAAQAGPAPLLIIAGAGTGKTTTLVHRVA
HLIATGIDPGEILLLTFTRRAAAEMIRRVEQLLAVAAKTPGIARIHGRHVVGGTFHAIAT
RHLREFGQYLGLDADFTILDRSDAEDLMNQLRSELDITRQEKRFPLKGTCVEIYSRCVNT
RQPLSLVLKETFPWCVEHEAGLKALFQLFTQRKEEQRILDYDDLLLFWLALLQDSPAAPL
LRQRYKAVLVDEYQDTNALQGEIVRALRPDGQGLTVVGDDAQSIYSFRAATIENILRFDQ
EYPGTNVLTLSQNYRSSPEILAASNLVMSLATEGRQKQLWTNRPPQGKPLLVNCRDDNEQ
STMVAERILELREMGVSLKGQAVLFRASHHSATLEIELSRRNIPFIKFGGLKFVEAAHVK
DAMAMLRLAENPRDTVSALRVLLLLPGIGPKTARQLTERLGSGSSAFEPWREHTPAAATK
IHWPVFVALLRTLVKGGQTTTPLPVQLAQVRQFLAPLLEQKYDHAPARLRDLEQLEIIAA
RYESRSQFLAELTLDPPTSTQDFAQDPLLDEDWITLSTIHSAKGLEWDAVYVLHAADGNI
PADMATRNPREIEEERRLFYVALTRAKTHLQVYHPQRYYFHGKNQSDRHSYSQRTRFLPD
DILTAWQIVTPRIHEPASQTHIANGLTTADVRKKIGRMWE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgattccccacagacagccagccctccatcagttcctttagcagatctttcc
cgttggcagcaggatctcaatcccgagcaacgggccgctgctcaggcagggccggctcca
ctgctcattattgccggtgccgggactggcaaaaccaccacgctggttcatcgagtcgct
cacttgatcgctacagggatcgaccctggtgaaatcctgctgctgacgttcactcgtcga
gctgccgccgaaatgattcgccgggtcgagcaacttctcgcggtggctgcaaaaacgccg
ggcattgcacgtatccatggtcgccacgtcgtcgggggaacattccatgccattgccacc
cgacatctgcgggaattcggccagtatctcggacttgatgcggacttcacgattcttgat
cgcagtgacgccgaagatctgatgaaccagcttcgctcagaacttgacatcacacgccag
gaaaagcggtttcctctcaagggcacctgtgtcgaaatctattcccgctgcgtcaatacc
cgtcagcccttaagccttgtcctaaaagagacttttccctggtgtgtcgagcatgaggcc
gggctcaaagccttgtttcaattattcacccagcgaaaggaagagcagcggattcttgat
tacgacgatctcctcctcttctggctggcactcctgcaggatagccctgccgctccactc
ttgaggcagcgatacaaagccgtcctcgtcgatgaatatcaggacaccaacgccctgcag
ggcgaaattgtgcgggcacttcgtcccgatggtcagggtctgacagtcgtcggagatgac
gcccagtcgatctattcctttcgagccgccaccattgagaacattctccgattcgatcag
gaatatcccggcaccaatgtcctcacgctttcacaaaattatcgcagttctcccgagatt
ctcgcagccagtaatctcgtgatgtcactggcgaccgaaggccgccagaaacaactatgg
accaaccgtccaccgcaagggaagccgctacttgtcaattgccgcgacgacaacgagcag
agcacaatggtcgccgagcgcattctggaactgcgagaaatgggggtttccctcaaagga
caggccgttctctttcgtgcttcgcatcacagcgccactctcgaaattgagctctctcgc
cgaaacattccgttcatcaaatttggcggtctgaagttcgtcgaagcagctcatgtgaaa
gatgccatggccatgctgaggctggccgaaaatccgcgagacaccgtctccgccctgcgt
gtgttattgctgctccccgggattggccctaaaacggcccgtcaactgacggaacgcctg
ggatcagggagttctgcctttgaaccctggcgcgaacataccccagccgcagcgacgaaa
attcattggccggtctttgtggctctgttacggacattggtcaaaggtggtcaaaccaca
acgcctcttcccgtgcaactcgcgcaggttcgtcagtttctcgctcccctcttagaacag
aagtacgaccacgcaccggctcgcctgcgcgatctggaacaactcgaaatcatcgccgcc
cggtatgaatcccgcagtcaatttctggcagaactgacactcgacccacccacttctacg
caggattttgctcaagacccgcttctcgatgaggactggatcacactctcaacgattcat
tctgccaaaggtctcgaatgggatgccgtttatgttctgcatgcggctgatggaaacatc
cccgccgatatggccacacgcaaccctcgcgaaatcgaagaagaacgccgcctgttttac
gtcgctctcacgcgcgcgaaaacgcatctgcaggtttatcatccacagcgatattacttt
cacggcaagaatcagtcagatcgccacagctactctcagcgcacccgcttcctgccggat
gacattctgacggcttggcagatcgtcacaccccgcattcacgaacccgcaagtcaaact
catatcgctaacggactaacaaccgccgacgtccgcaaaaaaatcggccgaatgtgggaa
tag
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