Planctopirus ephydatiae: Spb1_02320
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Entry
Spb1_02320 CDS
T06220
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
peh
Planctopirus ephydatiae
Pathway
peh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spb1_02320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
peh03400
]
Spb1_02320 (mfd)
Enzymes [BR:
peh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spb1_02320 (mfd)
DNA repair and recombination proteins [BR:
peh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Spb1_02320 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDV28369
UniProt:
A0A518GIF1
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All DBs
Position
259953..263264
Genome browser
AA seq
1103 aa
AA seq
DB search
MSDSPSLQSLVPRLRQHPGIQAILESLRQGNSGTVDGAWGSSCALTTACVATSTSGPVIA
ILPRARDLEDFAGDLTSFLGQSPLVFPAWESLPSEQSTSDPIHGERLRLLKQLESEAPPR
LVLTSIAATLQPVPARQSRQKSMRLFRVGDELPLESTSEWLISLGFERVLSIETRGEFSI
HGGIVDLWTADLEHPIRIELFGDEIESIRTFDVESQRKLADLDEIEVSVLDLRRLPQEQM
PTSLDDPFPTEHFSGSWPKNTVVVLVDHADIRHEAQAYLERLGDRRGMFSSESSLQKMLQ
FPSLNIAPLLADGFDTTCHLQVESVERLTGPKTEALRELCTILQPDEHVLLACHNAAAIE
RMQELLDGLEEAQKPRIRLCEGTITRGFRLTWERLVVLSDHELFGRVEVRRTATRTRLET
RAIDSFLDLNEGDLVVHLSHGIGRFLGMQILAKGEQSEEHMHLEFKDGAKLFVPVALIHL
VQKYVGGQKTAPELSKLGGTAWAQKKKRVAEAVTDMAADMLRLQAERELQPGIAFPPDSH
WMEEFEASFPYIETIDQSKAILDIKRDMERPRPMERLICGDVGFGKTEVAMRAAFKAVDG
GKQVAVLVPTTVLAEQHYRSFSSRFAEFPINIGQLSRFRTKTEQKLTLSGLMDGSVDLVI
GTHRLVQSDVHFKDLGLLIIDEEQRFGVEAKERLKKLRTQTDILTLSATPIPRTLHLSLI
GVRDISNLETPPQDRMAIETRICRFDPTLIRQAIVRELNRGGQIYFVHNRVYNIQTMAER
IRSIVPEAQVGVVHGQMNEHEMEEAMLGFVRGDLDVLVATTIIESGLDIPNANTIFINQA
EHYGLAEMHQLRGRVGRYKHRAYCYLMVEEGKILSPQATKRLKAIEEFSELGAGFKISMR
DLEIRGAGNILGTEQSGHIAIVGYELYCQLLENAVRALKREPLKEHRHVDVDLPISAFIP
SEYVPPGRLKIEMYRKLSQVVSIEELRQYETEIKDRFGPVPKPAQRMIDLREIQLLASRW
SIDRIHLEGGYCVFSYRLPRKIEKLAQETPFTLRVVDDRQAHLVLPRGYETGLKLLRLIR
KVLDPAGEFAPRKGEDTAQVAAE
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatagtccctctctgcagtccttagtccccaggcttcgtcagcaccctggtata
caggccattctcgaaagtctgaggcaaggcaacagtggcaccgtcgatggtgcctgggga
tcaagttgcgcactcaccaccgcctgtgtggcaacgtccacatccggccccgtcattgcc
atcctgccccgagcgcgcgatctcgaagatttcgctggcgatctcaccagctttctgggc
caatcaccactggtattccctgcctgggaatcgctccccagcgaacaatcgaccagcgac
ccgattcatggcgaacggctgcgtctgctcaaacaactcgaaagcgaagctcctccccgg
ctcgttctgacatcgattgccgccaccttacaacccgttcccgcccggcaatcgcgccag
aagtcgatgcgactttttcgagtgggagatgaactcccgctcgaatcgacatctgaatgg
ctgatttctttaggcttcgagcgcgtgctttcgatcgaaacccgtggcgagttcagcatt
cacggcggtattgtcgatctctggacggccgatctcgaacatccgattcgtatcgaactc
tttggtgacgagatcgaatcgatccgcacgtttgatgtcgaatctcagcgaaaactggca
gatctggatgagatcgaagtgagtgtcctcgatctgcggcgcctgcctcaggagcagatg
cccacatcgcttgacgatccttttccgaccgagcatttctccggcagctggccgaaaaac
acggttgtcgtcctcgtcgatcatgccgatatccgtcacgaagcccaggcgtatctcgaa
cgattgggtgaccgtcgcggtatgttttcgagcgaatcgtctttgcagaagatgctgcag
ttcccctcgctgaatatcgcaccattgcttgccgatggttttgacacgacctgtcatctg
caggttgaatcggtcgagaggctcaccggccccaaaaccgaagccttacgagaactctgc
accattctgcagcccgatgagcatgtcctcctggcttgtcataatgccgccgccatcgaa
cgcatgcaggaactgctggatggtctcgaggaagcacaaaaaccccgcatccgcttgtgc
gaaggaacgattacccgtggctttcgtctcacatgggagcgtttggttgtcctttccgat
catgaactttttggccgggtcgaagtccggcggactgccactcgcaccaggctggaaaca
cgcgccatcgacagcttcctcgacctcaacgagggagatctggtcgtgcatctgtcgcat
ggcatcgggcgatttctcgggatgcagattcttgccaaaggggaacagtccgaagagcat
atgcacctcgaattcaaggatggtgccaaactctttgtccctgttgcgctgatacatctg
gtgcagaagtatgttggcgggcagaaaacggctcccgaactttccaagctgggcggaacg
gcctgggctcagaagaaaaaacgcgtcgcggaagctgtcaccgatatggcggctgatatg
ctccgcctgcaggccgaacgggaattgcagccgggcattgcctttcccccggacagccac
tggatggaagagttcgaggcctcgtttccttacattgaaacgatcgatcagtcgaaggcc
attctcgatatcaagcgcgatatggaacgcccccggcctatggaaaggctcatttgcggc
gatgtcggctttggtaaaaccgaagtcgccatgcgtgctgctttcaaagcagtcgatggt
ggcaagcaggtcgccgtcctggtccccacgacagtcctggcagaacagcattatcgcagc
ttcagcagccgctttgccgagttcccgatcaacattggtcagctatcccgcttccgcacg
aagaccgagcaaaagctgacactcagtgggttgatggatggctcggtggatctcgtcatt
gggacgcatcgactggttcaatccgatgtccatttcaaagatctcggcctgctgatcatt
gatgaagagcagcgctttggtgttgaagccaaagagcggctcaaaaagctgcgcacgcag
accgatattctcacgttaagcgcaacacctatcccgcgaacattgcacctctcgctcatt
ggtgtgcgcgatatctcgaatctcgaaactccaccacaagatcgcatggcgattgaaacc
cgcatctgccggtttgatcccacactcatccgtcaggcgatcgttcgcgaactcaatcgc
ggcgggcagatctacttcgtccacaatcgcgtttacaacattcagaccatggccgaacgt
attcgttcgattgttcccgaagcgcaggtgggtgtcgtgcatggccagatgaacgaacac
gaaatggaagaggcgatgctcggattcgtccgtggcgatcttgatgtgcttgtggcgaca
acaattatcgaaagtggcctcgatatccctaatgcgaacaccattttcatcaatcaggcc
gaacattatggccttgcggaaatgcaccagcttcgcggccgtgtgggtcgatacaaacac
cgcgcctattgctacctgatggtcgaagaagggaagatcctctcacctcaagccaccaaa
cggctcaaggcgattgaagaattcagcgagctgggtgctggttttaaaatctcgatgcgc
gatctcgaaatccgcggggccgggaacatcctcgggacggaacagagcgggcatatcgcc
atcgtgggttatgaactttactgccagcttctggaaaatgccgtcagggctttgaagcgg
gaacctctcaaagaacatcggcatgtcgatgtcgatctcccgatttcggcattcatcccc
agtgaatacgttccgccgggccgcttgaaaatcgagatgtatcggaaactgtcgcaggtc
gtttccatcgaggaactgcgtcagtacgaaaccgagatcaaggatcgctttggcccggtt
cccaagcctgcccagcggatgatcgacctgcgggaaattcagctcctggccagccggtgg
tcgattgatcgaattcacctcgaagggggctattgtgtcttcagttatcgcctccctcgc
aaaattgaaaagctggcgcaggaaactcctttcacactccgggtcgtcgatgaccgtcag
gcgcatctcgttcttccccgtggctacgagactggcctcaagctgctcaggctcattcgc
aaagtcctcgatcccgcaggggaatttgctccccgcaaaggagaagacacggctcaggtt
gccgccgagtaa
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