Planctopirus ephydatiae: Spb1_10030
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Entry
Spb1_10030 CDS
T06220
Symbol
truD_1
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
peh
Planctopirus ephydatiae
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
peh03016
]
Spb1_10030 (truD_1)
Enzymes [BR:
peh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Spb1_10030 (truD_1)
Transfer RNA biogenesis [BR:
peh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Spb1_10030 (truD_1)
Prokaryotic type
Spb1_10030 (truD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QDV29134
UniProt:
A0A518GKL4
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All DBs
Position
complement(1243173..1244339)
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AA seq
388 aa
AA seq
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MTEQTAPQLAPSAWPELTSQTAGVGGVWKQSPEDFLVEEIPAYLPCGEGEHLFLWIEKRN
LSSEMLVAQLSKQLAVPRSEIGMAGLKDKQAVTRQWVSVPARAQKLVPALESDDLTVLEA
SRHRNKLKTGHLKGNRFVAILRGVDPDHAKIDAIARQLQAQGCPNYFGMQRFGHQHSTWK
LGWQLLLGQISPQDIPAPRRKFLLRLALSAVQSGLFNEVLAQRLGDGLFSTVLCGDLMEI
LPAGAKFLVTDAAADQPRFDSWEISTTGPIFGVRMRSPGGEVHARELAILQKSVLTIEHF
QKFSSLMEGTRRPFRFLPAGLTCELFPTNSSAHETPRGDLRVSVELPAGAYLTVLLHEFQ
KSPLQAAESPDSAANSEDADEIASQSAD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacagacagccccacagcttgctccttctgcctggccagagctgaccagtcaa
acggcaggggtgggcggtgtctggaaacaatccccggaagattttctcgtcgaagaaatc
ccggcgtatctaccctgcggcgaaggtgagcatctgtttctctggatcgagaagcgaaat
ctttcgagtgaaatgctcgtggcacagctctcgaaacagctcgccgttccccgctcagaa
attggcatggccggcttgaaggataaacaggctgtgacccgccaatgggtctcggttcct
gcccgggctcaaaagctggtaccagctcttgagagcgatgatttgacggtgctcgaagcc
agtcgacatcgcaacaagctcaagacaggccacttgaagggcaatcgttttgttgccatt
ttgaggggcgttgatcccgatcatgccaaaatcgatgccattgccaggcaactgcaggct
caaggctgcccgaattactttggcatgcagcgatttggtcaccagcactcgacgtggaag
ctgggctggcaactgctacttggccagatctcgccacaagatattcccgcccccaggcga
aagtttctgctccgcctcgctctctctgctgtccaatccgggctgttcaacgaggtgctg
gctcagcggctgggtgacgggctcttctcgacagttctctgcggcgacctcatggaaatt
ctccccgctggggcgaagtttctggtcacagatgccgctgctgaccagccacgctttgac
tcgtgggagatctccaccaccggacccatttttggtgtgcgcatgcgttcgcctgggggc
gaagttcatgctcgtgaactggcgatcctgcagaagtcagtattgacgatcgagcacttt
cagaaattctcctcgctgatggaaggaacccggcggcccttccgattcttgcctgcaggc
ctgacctgcgaattgtttccaaccaacagctctgctcacgaaacgcctcgtggtgacctc
cgcgtttccgtcgaactcccggctggtgcgtatctgacggttctgctgcacgagtttcag
aagtcgcccctgcaagcagcggagtctcctgattctgctgccaattccgaagatgccgac
gagatcgcctcacaatcggcagattaa
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