Planctopirus ephydatiae: Spb1_12480
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Entry
Spb1_12480 CDS
T06220
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
peh
Planctopirus ephydatiae
Pathway
peh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spb1_12480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peh03021
]
Spb1_12480 (rpoC)
03400 DNA repair and recombination proteins [BR:
peh03400
]
Spb1_12480 (rpoC)
Enzymes [BR:
peh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spb1_12480 (rpoC)
Transcription machinery [BR:
peh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spb1_12480 (rpoC)
DNA repair and recombination proteins [BR:
peh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spb1_12480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QDV29362
UniProt:
A0A518GL23
LinkDB
All DBs
Position
1528267..1532550
Genome browser
AA seq
1427 aa
AA seq
DB search
MSTGETSYDRVNEFSSIKINLASPHDIRSWSFGEVKKPETINYRTYRPERDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKSMPSR
LGALLSVKTTSLEKVIYFQDYLVIDPGDTTLKKGQLLTEEEYRQAKTKFGEGSFDADMGA
DAIKKMLLDLNLVEISQQLRVELKKTNSQQKKKELIKRLKIVESLRDSDNRPEWMVLDCV
PVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIVRNEKRMLQQS
VDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPTLK
LHQCGLPKKIALELYQPFIIRRLKELGHADTIKSAKRMLERRDEEVWDILEEVITNHPVL
LNRAPTLHRIGIQAFEPQLVEGNAIRIHPLVCRGFNADFDGDQMAVHLPLSIEAQVEAHT
LMMSTHNIFSPSNGAPIISPSQDIVMGCYYVTMKKSGLIGDGMTFSSTQEVYTAFQHGKV
RLHTSIRVRLPKDKRVKGEGADTYKKGGLVETSVGRVVFNDMISPKMAFYNYTMKGRDLA
GVISDCYLEMGRRETIALLDRMKETGFRESTRSGLSFAASDLKTPPNKDKVISEAEAHVL
KFQKNYEKGVITAKERYEQTLDRWTQAREAITVSMMDEFKNDVRDEGRYVNPIFLMADSG
ARGGVEQIRQLAGMRGLMAKPSGEIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADICQNLVITMCDCGTTKGITRGVIYRGEKVEVGLADAIRGRVSRTNIV
NPVTDEVVVREDELITIEIARKIEAMGLEKIQVRSPMTCEAGLGICQLCYGMDLSTGALV
EEGLAVGTIAAQSIGEPGTQLTMRTFHVGGTASRDVEDSEIKCRKGGRVRFARVRSVVNA
DGKAVVLGRNGEVTVVDSKDRELEKYTIPNGATLQVAENEVIEAGQILCSWDPHSVPILC
EVGGKVRFEDLIEGQTVRSETDRMGNIRKTIIEHKGDRHPQIVLEDSAGKILDFYYLPER
ATVEVLEGQQVAAGSILAKNPRESMGTQDITGGLPRVTELFEARKPKEPAIISEIDGEVE
LVAEKKRGKRIIKVKGVDGTEREHIIPHGKQLLVHSGEQVKAGDALVRGPLVPHDILAVS
GEEAVHAYLLHEIQNVYRSQRVVIDDKHIELVVAQMLRKVRVDDVGDTTLLPGVLIDRFE
FRKINQKLQQCGRVTDPGDSEFHKDDIVPLETIAQVNEEIEASGGQPIATAKPRPASAST
QLLGITKAAVQSESFLSAASFQETTKVLTEAAIAGKSDYLVGLKENVILGHLIPAGTGFK
LHQKSEVRIRPEALAELTAERDRILAARANLLNEPEISPNSGLGRLE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccggcgaaacatcgtacgatcgcgtcaatgagttttcctcgattaagatcaat
ctggccagccctcacgatatccggagctggtccttcggtgaggtgaaaaagccggagact
atcaactaccgaacatatcgtcccgagcgggatggtttgttctgtgagcgtattttcggt
ccagaaaaagactgggaatgcgcctgcggtaagtaccgcggcatgaagtacaaagggatg
atctgcgaccgctgcggcgttaaagtcacgcatagtcgtgttcgccgtaagcgcatgggg
cacatcgagttggcggcccccgtcgtgcatatctggttcttcaagagtatgcctagtcgc
ctgggtgctctgctgagtgtgaagacgacgtcactggagaaggtgatctacttccaggac
tacctggtgattgatccgggtgacacgactctgaagaagggtcagttgctcacggaagaa
gaatatcgtcaggccaaaaccaagttcggcgaaggcagcttcgacgccgacatgggcgcc
gatgctattaagaagatgctgctcgatctgaatctcgtcgagatttcccagcagcttcgc
gttgagctcaagaagaccaacagccagcagaagaagaaagaactcatcaagcgtctgaag
attgtggagtccctccgcgacagcgataaccgccctgagtggatggtgctcgactgtgtg
ccagtgattccacctgatctgcggccgctggtgctgctcgattccggcaacttcgcgacg
agcgatctgaacgatctctaccgccgcatcatcaatcgaaacaatcggttgaagaagctg
gttgatctcaatgcgcctgaagtgattgtacgcaacgaaaaacgcatgttgcagcagtcg
gtcgatgcgttgtttgataacaatcgctgcaagcggccagtactgggctcgtcgaaccgc
ccgctgaaatccttgactgatatgatcaaggggaagcagggccgcttccgcgagaacctg
ttgggtaagcgcgttgattactcggctcgttcggtcatcgtggttggtccgacactcaag
ttgcaccagtgcggtttgccgaagaagattgctctggagctgtatcagcctttcattatt
cgtcgcctcaaggaactcggccatgccgataccatcaagtcggccaagcggatgctggag
cgtcgcgacgaagaggtttgggatattcttgaagaggtgatcacgaatcatccggtgttg
ctcaaccgcgcacccacgctgcaccgaattggtattcaggcgtttgaaccacagctggtg
gaagggaatgcgattcgtattcacccgctggtttgccgtggttttaacgctgactttgac
ggtgaccagatggccgtccacctgccgctctcgattgaggcacaggttgaggctcatacg
ctgatgatgtcaacgcacaacatcttcagcccgtcgaacggggcgcccatcatcagtccg
tcacaggacatcgtgatgggttgctattatgtgaccatgaagaagtctggcctgattggc
gacggcatgacattctcttcgacgcaggaagtctacacagccttccagcacggcaaggtg
cgactgcatacctcgattcgcgttcgtttgccgaaagacaagcgagtcaagggagaaggg
gctgacacctacaaaaagggtggcctggtcgagacgagcgtcgggcgagtggtctttaac
gatatgatctcgccaaagatggctttctataactacaccatgaaaggtcgcgacctggca
ggtgtgatttccgactgctatctcgaaatgggtcgtcgcgaaacgattgctcttctggat
cgcatgaaggaaaccggattccgcgaatcaactcgctcgggcctttcttttgccgccagc
gatctgaagacaccacccaacaaggacaaggtgatttcagaagccgaagctcacgtgctc
aagttccagaagaactatgagaagggtgtgattacggcgaaagagcgctatgaacagacg
ctggaccgctggactcaggctcgcgaagcaatcacggtctcgatgatggacgagttcaag
aacgacgttcgcgatgaaggtcgttatgtgaacccgatcttcctcatggcagattctggt
gcacgcggtggtgtcgagcagattcggcagttggccggtatgcgtggtttgatggctaag
ccaagcggcgaaatcatcgaaacaccgattaaggccaacttccgcgaaggcctgacagtg
ctggagtatttcagctcgacacacggtgctcgtaagggtctggctgataccgcactcaag
acagccgattcgggatacctgactcgtaagctggcagatatctgtcagaatcttgtcatc
accatgtgtgattgcggtactaccaaggggattacccgcggtgtgatttaccgtggtgaa
aaggtcgaagtcggtctggcagacgccattcgtggacgtgtcagccggacgaatatcgtc
aatcctgtgacagatgaagtggttgttcgtgaggatgaactgatcaccatcgagattgcc
cgcaagattgaggcgatgggtctggagaaaatccaggttcgcagccccatgacctgtgag
gcaggcttggggatctgtcagctttgctatgggatggatctctccacaggtgcactggtt
gaagaaggcctggcagtcgggacgattgctgcccagtcgattggtgagcctggaacccag
ttgacgatgcgtaccttccacgtgggtggaacggcatctcgtgacgtggaagacagcgaa
atcaagtgccgcaagggtggtcgagttcgctttgcccgcgttcgcagcgtcgtcaatgcg
gatggtaaagccgtggtgctgggacgcaatggtgaagtcaccgttgtggacagcaaagat
cgtgaactcgagaagtacacgattccaaacggggcgactctgcaggttgccgaaaacgaa
gttattgaagcgggccagattctctgctcgtgggatccgcactcggtgccaatcctctgc
gaagtgggtggtaaggtgcggttcgaagatttgatcgagggtcagacagttcgctctgaa
accgatcgcatgggtaacattcgtaagacgattatcgagcataagggtgatcgtcatccg
cagattgtgctggaagacagtgctggcaagattctggacttctactacctgcctgaaagg
gcgaccgtggaagttctcgaaggccagcaggtggctgccggttcgattctggcgaagaat
ccccgtgaatcgatgggtacgcaggacatcaccggtggtctgcctcgagttactgaactg
ttcgaagcccgtaagcctaaagaacctgccattatctctgagattgatggcgaagtggaa
ctggtggctgagaagaaacgcggcaagcgaatcatcaaggtcaagggtgttgacgggacc
gaacgtgaacacattattccccatggtaagcaattgctggttcactcaggtgagcaggtg
aaagccggggatgcccttgttcgcggaccgctggtgcctcacgacattctggcagtcagt
ggtgaagaagcagtccatgcctatttgctgcatgaaatccagaacgtgtaccgctctcag
cgtgtggtcatcgacgacaagcacattgaattggtcgttgcccagatgctgcgaaaggtt
cgtgtggatgatgtcggtgatacgacattgctgccaggcgtgctgattgaccggtttgaa
ttccgcaagattaatcagaagcttcagcagtgtggccgagtgaccgatcctggtgactca
gaattccataaggacgacattgtcccgctggaaacgattgctcaagtgaacgaagaaatt
gaagcttccggcgggcagcccatcgcgacagccaagccgcgaccagcttctgccagtact
caattgctggggattacgaaggccgctgtgcagagcgaaagcttcctgtcggcagccagt
ttccaggaaacgacgaaggtgctcacggaggctgccatcgccggcaagtccgattacctt
gtgggtttgaaggaaaacgtgattcttggccacctgattcccgcaggaactggcttcaag
ctccatcagaagtctgaggttcgaattcggccggaagctctcgcggagctgactgccgaa
cgagacaggattctggccgcccgggcaaacctgctcaacgagccagagatttcgcccaac
agtggcctggggcgtctcgaataa
DBGET
integrated database retrieval system
