Planctopirus ephydatiae: Spb1_12740
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Entry
Spb1_12740 CDS
T06220
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
peh
Planctopirus ephydatiae
Pathway
peh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spb1_12740 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peh03021
]
Spb1_12740 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
peh03400
]
Spb1_12740 (rpoA_1)
Enzymes [BR:
peh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spb1_12740 (rpoA_1)
Transcription machinery [BR:
peh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spb1_12740 (rpoA_1)
DNA repair and recombination proteins [BR:
peh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spb1_12740 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
GSIII_N
Motif
Other DBs
NCBI-ProteinID:
QDV29388
UniProt:
A0A518GLE8
LinkDB
All DBs
Position
1549088..1550098
Genome browser
AA seq
336 aa
AA seq
DB search
MRIRWRGLELPSRVVPERETLSSTYGKFTVEPFERGFGSTIGNSLRRILLSSLEGSSVTS
VKIQGVQHEFTTIPGIVEDVTEIVLNLKAIVVKNHSPSTKTLRIEKTSRGVVTAGDIITD
DQVEILNRDLVIATMTDDVPLYLEMTVENGRGYIPAADHHGPEQELGVIPLDAIFSPVVR
VRYLIEETRVGQRTNYDRLILEIWTNGTVTPESALVESAKILRKHLNPFITYREPGPEMF
PEGGLRNMLEATGYAPVDLELEEKLGQSLAELNLSVRATNCLESEGINFVRDLVTRTEDQ
LLQVRNFGETTLTEVRERLGLIGLRLGMKLPNSARV
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgcggattcgctggcgtggactggaattgccgagccgggttgttcctgagcgcgagaca
ctgagttcgacttacggcaagtttaccgttgagccattcgagcgtggtttcggttcaaca
atcggtaacagcttgcgtcgcattctgctttccagtctggaaggtagttctgtgacttcg
gtcaagattcaaggtgtccagcatgaattcacgacgatacccgggattgttgaggacgtg
actgagatcgttctgaatctgaaggcgatcgttgtcaagaaccacagtccttcgaccaaa
actctgcggatcgagaagacctcgcgtggagttgtcacggctggcgacatcatcaccgat
gatcaggtggaaattctgaatcgtgatctcgtcatcgcgaccatgacggatgatgtgcct
ctgtatctggaaatgacagtcgagaatggtcgtggttatatcccagcggctgatcatcat
ggaccggaacaagagctgggggttatcccccttgatgcaatcttctcacccgtggttcgc
gtccgttatctgatcgaggaaactcgagttggtcagcggacaaactatgaccgcctgatt
ctggaaatctggacgaatgggaccgtcactcctgagtccgcactcgtggagtctgccaag
attctgcgaaagcatctcaacccgtttattacctatcgcgagccaggtccagagatgttt
ccggagggtggactccgaaatatgctcgaagccacgggatatgctcctgtggatcttgag
ctggaggaaaagctgggccagagtctggctgaattgaacctttcagtgcgtgccaccaac
tgtctggaatctgaaggaattaacttcgttcgagatcttgtcacgcgaactgaagatcaa
cttttgcaggtgcgaaatttcggtgagacaactctcacagaagttcgcgagcgcctggga
ttgattggcttgcggttgggtatgaagttgcctaactcggcacgtgtttag
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