Planctopirus ephydatiae: Spb1_17940
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Entry
Spb1_17940 CDS
T06220
Symbol
sigB_2
Name
(GenBank) RNA polymerase sigma factor SigB
KO
K03086
RNA polymerase primary sigma factor
Organism
peh
Planctopirus ephydatiae
Pathway
peh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spb1_17940 (sigB_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peh03021
]
Spb1_17940 (sigB_2)
Transcription machinery [BR:
peh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spb1_17940 (sigB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
HTH_10
Asp_decarbox
Motif
Other DBs
NCBI-ProteinID:
QDV29875
UniProt:
A0A518GMJ9
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All DBs
Position
2200000..2201130
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AA seq
376 aa
AA seq
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MIATLERSRSKSKKSPSGSKSSRSKSATIATKVSARISGKSQNLTEELCLSTLVSEKRIC
KSLNSPSVTAVKNKTAVRAPRPVAPQRLIPPPLAYVDHPLFARKKAEAQLEQLKPLTIDS
LSASPVSQATTAGALLPAFARSRLLAPDEENYLFLWMNFCRYQAEAARKKLAKTPSSDAY
FAQYNLWLNKSITARNQIVQANLRLVVALARKCCGSIEQLAELVSEGVMPLIRSVELFDI
SLGNRFSTYATWAVRNQMHRHFKKVQTWNEHTTAYIHEALEQFEDFRSPVETQPGESQEA
CQRELTSLLETLSERERAVIAARFGLDGQPRGQSLSEISGRIGLSKERVRQIVLKALDKL
KLYAEQKPVLVELFQA
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgattgcaactttggaaagatccagaagcaaaagcaagaagtctccctcgggatcaaag
tcatctcgatcgaaatcggcaactatagcgacaaaagtttctgccagaatttccggtaaa
tctcaaaatttgacagaggaactttgcctttcgaccctcgtgtctgaaaagcgtatctgc
aagtctttgaattcaccctcagtcacggctgttaagaataaaacagccgtccgagctcca
cgcccagttgctccccagcggttgattcctccacccttggcctatgtggatcatccactc
ttcgcacgcaaaaaagccgaagcacaactggaacagttgaagccactcacgattgattcg
ctgagtgcttcacctgtctctcaagcgaccacggccggagcacttttgcccgccttcgcc
cggtctcgtctactggctccggatgaagaaaattatctcttcttgtggatgaacttctgc
cgttaccaggccgaggccgctcgtaagaagctcgccaaaactccttcgagtgatgcttat
tttgctcagtacaatctctggttgaataaatcgatcactgctcgcaatcagattgttcag
gccaacctgcggcttgtcgtggctctggctcgtaaatgctgtggatcgattgaacagctt
gccgaactcgtgtccgaaggggtcatgcctctgatccgttcggttgagctgttcgatatc
agcttgggaaatcgcttcagcacttacgccacctgggctgttcgcaatcagatgcatcgc
cacttcaaaaaggtgcagacctggaacgaacacactacggcttacatccatgaagccctc
gagcagttcgaagatttccgcagcccggtagaaacacagcctggagaatctcaagaggcc
tgccagcgcgagctgacatcacttctggaaacattgtcggaacgcgagagagccgtcatt
gccgcccggtttggtctcgatggccagcctcgcggccagtcactctccgaaatctccggg
cgcatcggtttgagcaaagagcgcgttcgacagatcgtcctcaaggctctcgataagttg
aaactttacgccgagcagaagccagtgctcgtggaactgttccaggcctga
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