Planctopirus ephydatiae: Spb1_19170
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Entry
Spb1_19170 CDS
T06220
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
peh
Planctopirus ephydatiae
Pathway
peh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spb1_19170 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peh03019
]
Spb1_19170 (deaD)
03009 Ribosome biogenesis [BR:
peh03009
]
Spb1_19170 (deaD)
Enzymes [BR:
peh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spb1_19170 (deaD)
Messenger RNA biogenesis [BR:
peh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spb1_19170 (deaD)
Ribosome biogenesis [BR:
peh03009
]
Prokaryotic type
rRNA helicases
Spb1_19170 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDV29990
UniProt:
A0A518GMY8
LinkDB
All DBs
Position
complement(2360823..2362649)
Genome browser
AA seq
608 aa
AA seq
DB search
MTELPADIETTTTFADLNISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGT
GKTAAFAIPMLQAIDLSSSATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQD
YQLQFRQLNRGAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWIL
EQTPSQRQIALFSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRYITVPPFQKEA
VLARILETEPIDAVIIFVKTKSTTVPLAEFLGSQGYRTAALSSDVPQAQRERIVEHLKSG
RLDIVIATDVAARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRER
FQLRRIEQVTRQPIEPMQVPAAAQVNERRIERFKSKIKTALDHRDLEAFSGIIESLQKES
DTPIEQIAAALAVLAAGDAPLLVKDDIRDFNSIETRNREPAPGRGNPRLARAQDAERSMR
PRGREAGREERAPRSEGRSFRPMETFRIQVGQIHQVKPANIVGAIANETGLDSSCIGRIE
IYDNYSTVDLLAGMPDDVFHSLKAVEVLGQQLNISRATEHPANEEFSARKSKGRFDSKRN
LKPNQQRS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattgcccgctgacatcgaaaccaccacgacttttgctgatttgaacatcagc
ccgccgattctctcggctgtcactgcctccggatatgtgaatccgactcccattcaggct
cggacgattccgctgttgatcgagggccgagatgtccttggtatggctcaaaccgggact
ggcaaaacggcagcctttgccatcccgatgctccaggccattgatctctcgtcatcggcc
acgcaagtgctcatccttgcacccacccgagagttggcgatgcaggtggctgaagccttt
gaaaaatatgctgccaatctcaaaggtctgcgtgtcgccgccatctatggtggtcaggat
taccaacttcagtttcgccagttgaaccgtggtgcgcatgtcattgtgggcacacctggc
cgagtcatggatcatattcgtcgcggctccctcaagctcgattcactcaaaggtctcgta
cttgatgaagccgacgaaatgctgcgcatgggctttgcggaagatgtcgagtggattctc
gaacagactccttctcagcgtcagattgcactcttcagtgctaccatgcccgattcgatc
cgtcgcattgcccagaaacacctgaagaatcccgccgagatcacgatcaagcgtcgtacg
gcgactgccgaaacgattcgccagcggtatatcaccgtgccaccgttccagaaggaagca
gttctcgcccgcattctcgaaaccgaacccatcgacgcggtcattatcttcgtcaaaacc
aagagcacgacggttccattggctgagtttctcggcagccagggctatcgaacagctgcc
ctttcgagcgatgttcctcaagctcaacgcgagcgcattgtggagcatctcaagtccggc
cggctggatatcgtcattgccacagatgtggctgcccgcggactcgacgtccagcgcatc
acgcacgtcattaacttcgatctcccttcggatagcgaaagctatgtgcaccgcattggc
cgaacaggtcgtgcgggtcgtcagggcgataccattctgttcctgcatccccgcgaacgt
ttccaactccgccgcatcgaacaagtgactcgccagcccattgaaccgatgcaggtgcct
gctgctgcccaggtcaatgagcgacgcattgaacgtttcaaatccaaaatcaagacagca
ctcgatcaccgagatctggaagcgttctctggtatcattgaaagtctgcagaaagaatcc
gacacgccgattgagcagattgccgctgccctggctgtgctggcagcgggcgatgcaccg
ttgctggtgaaggacgacatccgggatttcaactcgattgaaactcgaaatcgtgaacca
gcacccgggcgtggcaatccgcgcttggcacgtgctcaggatgccgagcgcagcatgcga
cctcgtgggcgtgaagcgggacgcgaagaacgtgctccccgttccgaaggtcgctccttc
cgcccgatggaaaccttccgcattcaggtcgggcagatccatcaggtcaagcctgcgaac
atcgtgggtgccattgccaacgaaacgggtctcgacagttcatgcattggacggatcgag
atttacgataactacagcactgtcgatctgctggcaggtatgccagacgacgtgttccac
tctctcaaagccgtcgaagtgctgggccagcagctcaacatttcccgggccacagagcac
cctgccaatgaagaattttccgctcggaaatccaaaggacgctttgactccaagcgaaat
ctgaagcctaatcagcagcgatcgtag
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