Planctopirus ephydatiae: Spb1_19290
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Entry
Spb1_19290 CDS
T06220
Symbol
ihfB
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
peh
Planctopirus ephydatiae
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
peh03032
]
Spb1_19290 (ihfB)
03036 Chromosome and associated proteins [BR:
peh03036
]
Spb1_19290 (ihfB)
03400 DNA repair and recombination proteins [BR:
peh03400
]
Spb1_19290 (ihfB)
DNA replication proteins [BR:
peh03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Spb1_19290 (ihfB)
Chromosome and associated proteins [BR:
peh03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Spb1_19290 (ihfB)
DNA repair and recombination proteins [BR:
peh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Spb1_19290 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
Glyco_trans_1_2
RNA_pol_Rpc34
HU-CCDC81_bac_2
SelB-wing_2
Motif
Other DBs
NCBI-ProteinID:
QDV30002
UniProt:
A0A518GMX5
LinkDB
All DBs
Position
2379192..2379695
Genome browser
AA seq
167 aa
AA seq
DB search
MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA
RNPRTGDKVFVPEKFVVTFKPGKEMEEKVRQLEEAAAREAMARHEQEQAAERAAAISAPV
AGTPAHSYSEPTAAISPVPASLPSVNGHETGIGETAVPGTSQDSGQV
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaagaaagaaattgtcaaagcgatctccgacgagattgggcttacccaactcaaa
acgaaagagattgtccagaagacgttcgacgccattgtggagactctggtggcggacgga
cgcattgaacttcgcaactttggtgtcttcgaagtgaagaagcgtgcagcccgtaaggcc
cgaaatcccagaacgggcgataaggtctttgttcctgaaaagttcgtggtcactttcaag
cccgggaaagagatggaagaaaaggtgcggcagctggaagaagctgctgcccgtgaagcc
atggctcgccacgaacaggaacaggctgctgaacgcgctgcggcaatttctgctccagtg
gcgggaactcctgcacacagctattccgaacctactgctgccatcagcccagttccagcg
tcattgccctcagtcaatgggcatgaaacgggcatcggcgagaccgcagttcccggcacc
tcccaagactcagggcaggtctga
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integrated database retrieval system
