Planctopirus ephydatiae: Spb1_20820
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Entry
Spb1_20820 CDS
T06220
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
peh
Planctopirus ephydatiae
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peh03019
]
Spb1_20820 (hrpB)
Enzymes [BR:
peh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Spb1_20820 (hrpB)
Messenger RNA biogenesis [BR:
peh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Spb1_20820 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_22
HA2_N
T2SSE
nSTAND3
AAA_25
AAA_19
SLFN-g3_helicase
NACHT
Motif
Other DBs
NCBI-ProteinID:
QDV30154
UniProt:
A0A518GNN6
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All DBs
Position
2561028..2564945
Genome browser
AA seq
1305 aa
AA seq
DB search
MDALSPAPAAPDFAALKKRLPEAMAADRSGLSKLLETTARMAQRGQPFDRNLHRFTEWLE
KSITARKDRMARRPVIHYDNELPIMQRREEFLELLSQHSVIIVCGETGSGKSTQLPKFCL
EAQRGIDGLIGHTQPRRIAARSVAMRLSEELRAPLGQAVGYKVRFQEAVGAESYIKLMTD
GILLAEIQSDPHLRRYDTIIIDEAHERSLNIDFLLGYLKRLLTQRKDLKVIITSATIDAE
RFSQHFAVDGKPAPIIEASGRSYPVEILYRPILSKGDAAEDNDIDMQQAIVEAVQEATSQ
GFGDILVFLPTEREIHETAKILRGGERAASHREILPLYARLSAAEQQRVFQVSQSQRRII
LATNVAESSLTVPGIRYVIDTGTVRLSRYSPRSKIQRLPIEPVSQASANQRAGRCGRVGP
GICYRLYDEADFAARDPFTVPEILRTNLAQVILKTESLGLGSLSSFPFLDPPRTESIRDG
YRTLFELGAVDLDNRLTELGKKLSRIPTDPRIARVLFAADEQLCLAEMLIIASALETQDV
RERPVGKQDAADEAHAKFLDETSDFVTYLKIWDFYHELKAKLSHSQLKKACSQNYLSLTR
LREWSDLHRELSELVRAAGLKIRPRLQDTSAIHRAILAGFPTNIAMKTDSGEYQMGGGAL
GVIWPGSGMAKQKPRWIVAAEFVETTRRFLRIAGKIESEWVEPYVEHLVNRTYHDPHWDA
RSRSVVAYEKVSLQGLPIVNRRKTQFGRVNAAQAQEIFIRQALVEGDYPNPPAFLAHNLA
LRQELEDLQARLRKTSLIADPETQAKFYAQRLPPDIYDGPRLDKWLRIATKDSPDLLKMT
REDLLAQEADEDWRERFPDQIRVGSLQAEVEYHLEPGTAQDGITIKVPQAAFRQLEWQRL
GWLVPGLLEEKIVALLRGLPKEYRVTLSPIPESVKQILPLLKMGQGSLVDQLADIVRSRF
GARVLPAMFDESKLPNHLRMNIRLIDNSGQEVLSSREQTQLEAHAGQLIPSELISKSMER
TGLKTWDFATVHEKVIVRQNGLEIDGFPATVDEGKTVGLKLFDTAIRALHEHKRGVRRLA
VLKLQKELSMQVTHLPEIKRWELAAKALPQPFPLKEHLIDLLAMRAVCEGKVLPRSPEQF
QLAIDAGFDELGNAVTEVMRLMSSIFQQTAEIRVRLDRFPPVHDLTKRDLQRQYQWLLTT
GFLTQTPWFWLAQFPKYLKAMLLRMDRLTGNAAKDRDRIMNLEPWIVRYAQRWNEHKRRK
FVDVELETFRWMIEEYRIHLFVQEMATAVPVSDKRLEKQWLATTP
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgctctcaccggcccctgcggccccagacttcgctgcgttgaaaaagcgattg
cccgaagcaatggctgctgatcgatccgggctttcaaagctgctcgaaacgacagctcgc
atggcccagcggggccagccgtttgatcgcaatctgcatcgattcacagagtggctggaa
aagtcgatcacggcccgcaaagaccgcatggcgcgcaggccagtcattcattacgacaac
gaactgccaattatgcagcggcgggaagagtttctggaacttttgtcgcagcattcggtc
atcatcgtttgcggagaaacaggctcaggaaaatcgacgcaattgcccaaattctgcctt
gaggcccagcgcgggattgatggactgattgggcatactcagccacggcgaattgccgct
cgatcagtcgccatgcggctttccgaagaacttcgtgcacctttagggcaggctgttggc
tacaaagttcgctttcaggaggccgtgggagctgagtcatacatcaagctgatgacggac
gggattctccttgcagagattcaatctgacccgcacttgcgtcgttacgacacaatcatc
atcgatgaggcgcacgagcggtcgctcaatatcgattttttgctcggttacctcaagcga
ttgctgacacagcgcaaagatctcaaggtgatcattacttcggcgacaatcgatgcggaa
cggttcagccagcattttgcagtggatggcaagcccgctccgatcattgaagcctccgga
agaagttatcctgtcgagattctttaccggcccattttgagtaagggcgatgcagcagaa
gacaacgatatcgacatgcaacaggcgattgtcgaagcggttcaagaagcgacttcgcag
ggctttggagacattctggttttcttgcccaccgagcgggaaatccacgagacagcgaag
atattgcgtggtggtgagcgcgcggcttctcatcgtgagattctgccgctctatgcgcga
ctttctgcagccgagcaacagcgggtgtttcaagtttctcagagccagcgcagaatcatt
ctcgcaaccaacgtggccgagtcgtcactgactgttcccggcattcgctatgtgatcgat
acaggaaccgtgaggctcagccggtattcgccacgttcgaagatccagcgattgcccatt
gaaccagtctcccaggcatcggccaatcagcgggctggccgctgcgggcgtgtcggcccc
ggaatctgctatcgattgtatgatgaagcggattttgcagcgcgtgatccgttcacagtt
ccagagattttgcgaacgaacctggctcaggtgattcttaaaacagaatcgctcgggctc
ggaagcctgtcgagttttccgtttctggatccacctcgaactgaatcaattcgagatggt
tatcgtacgttgttcgagctgggtgccgtcgatctggacaatcgtctgacggaactcggg
aagaagctgtcgcggataccgaccgatcctcgcattgcccgtgtgttgttcgccgctgac
gaacagctttgcctcgcagaaatgctaatcattgcctctgccttggaaacgcaggatgtg
cgcgagcggcctgttgggaaacaggatgcagccgatgaagcccatgcgaagtttctggac
gaaacctctgattttgtgacgtatctcaaaatctgggatttttatcacgaattgaaggcc
aagctgtcgcacagccagcttaaaaaggcgtgctcccagaattatctctcattaaccaga
ttgagagagtggagcgatctgcatcgagagttgtctgaactcgttcgtgccgcagggtta
aagattcgcccccgtttgcaggatacctctgccatccatcgggcgattctggctggattc
ccaaccaacatcgcaatgaaaactgatagcggtgagtatcagatgggtggtggagcactg
ggtgtcatctggcctggttccgggatggcgaaacagaagcctcgctggattgtggctgcc
gagtttgtggaaacgactcgccgctttttgcgaattgcaggaaagattgaatccgagtgg
gtcgagccctatgtcgaacatctggtcaatcgaacttatcacgatcctcactgggatgct
cgcagtcggagtgtggtcgcttatgaaaaggtgagtctgcaaggattgccaatcgtcaac
cggcgtaagactcaattcggacgagtgaatgcggcccaggcacaggagatttttatccgt
caagctctggtggaaggtgattacccgaatcccccggcgttcctggctcataatctggca
ttaaggcaggagctggaagatctgcaggcgcggctgagaaaaacctcgctcattgctgat
cctgaaacccaggcgaagttctatgctcaaagattgcctcctgatatctacgacggcccg
cgtcttgataaatggctgagaattgctaccaaagattcgcccgatctcctcaaaatgaca
cgagaagatctgctggcccaggaggccgatgaggactggcgagaacgatttcccgaccag
attcgtgtgggaagtctgcaggccgaagtcgaatatcacctggaaccagggacggctcag
gatgggattacgatcaaggttccacaggcggcgtttcgtcaactggagtggcagcgattg
ggttggctcgttcctggccttctggaagagaaaattgtcgcgttgctccgaggattaccc
aaagagtatcgggtgacgctttccccgatcccggaatctgtcaaacagattctccctttg
ctgaagatgggacaaggttcactcgtcgatcaactggcagatatcgtccggagtcgcttc
ggagccagagtcctcccagccatgttcgatgaatcgaagctcccgaatcatctgcgaatg
aacatccgcctgattgataactcaggtcaggaagtcctctccagtcgagaacaaactcag
ctggaagctcatgccggccagctgattcccagtgaactgatttccaaatcgatggagcga
acgggccttaagacctgggactttgcgactgtccacgagaaggtgatcgtacggcagaac
gggctcgaaattgatggttttcctgccactgtcgatgaggggaaaacggtgggtctgaag
ctcttcgataccgccattcgcgcacttcacgagcataagcggggcgtgcggcgactggct
gtgctgaagctgcagaaagaactctcgatgcaggtgacccacctcccagagatcaagcgt
tgggaactggccgcgaaagcgctcccacaacccttcccactcaaagagcatttgatcgat
ctgttggcgatgagggccgtctgtgagggaaaagtcttgccgcgctctcccgaacaattc
cagttagcgattgatgccggttttgatgaactgggaaatgctgtcactgaagtgatgcga
ttgatgagcagcatttttcagcagacggcagaaattcgagtgcgattggatcgttttccg
cccgtgcatgatctgaccaaacgcgatctgcaaagacagtatcaatggctgttaacgact
ggatttctgacgcagacaccgtggttctggctggcgcagttccccaaatatctgaaagcg
atgctgctgcgaatggatcgactgacgggcaacgcggccaaagatcgtgatcgaatcatg
aatctggagccgtggattgtgcgttacgcccaaagatggaatgaacacaagcggcgaaaa
ttcgtcgatgttgaattagaaaccttccgctggatgattgaagaatatcggattcatctg
tttgttcaggaaatggcgaccgctgtgcccgtttcggataaacggctggagaaacagtgg
ctggcgaccaccccttag
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integrated database retrieval system
