Phycicoccus endophyticus: H9L10_01450
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Entry
H9L10_01450 CDS
T06776
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pei
Phycicoccus endophyticus
Pathway
pei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9L10_01450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pei03400
]
H9L10_01450 (mfd)
Enzymes [BR:
pei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L10_01450 (mfd)
DNA repair and recombination proteins [BR:
pei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9L10_01450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNN49790
UniProt:
A0A7G9R2G5
LinkDB
All DBs
Position
301558..305139
Genome browser
AA seq
1193 aa
AA seq
DB search
MPSLAPVRSHLAALPQLTTLSDALAVPAAAVEAYAPAGARPAVVSALSPRPGGAPVLAVC
ATGREAEDLHAGLAATLGEDAVGLFPSWETLPHERLSPRSDTVGQRLSVLRRLAHPDAGD
ATHGRLAVVVAPVRAVLQPVAKGLGELRPVALAAGDEVPLERIVEDLAAAAYARVDLVER
RGEFAVRGGILDVFPPTEEHPLRIEMWGDTVEEIRWFKVADQRSLEVAEHGLWAPPCREL
LLTPAVRERAAALADQLPGVADLLEKLAQGIAVEGMEALSPALVDGMETLLEVMPPGSVL
VDCDPERVRTRAHDLVSTSEEFLQAGWANAAGGSAVPIDLEAVLGTASFRTIAELREQAR
DLGLGWLDLTPFPGDGADDVLDLGLAPAPTFRGSTEDAVAELRRLVGQDWAVLAATEGPG
LAQRVCEVLAEHEVRCRLVPGQAEPEPGVVIVTTGAVGHGFLAPDERLAVITEADLTGAA
GGSGTSTKDMRRMPSRRRNQVDPLQLRPGDFVVHEQHGVGRFVEMMQRTVQGATREYLVL
EYAASKRGQPGDRLYVPTDQLDQVTRYVGGEQPTLNKMGGSDWQQTKGRARRYVKQIAAE
LIRLYSARMATTGHAFGPDTPWQRELEDAFAHVETPDQLSTIEEVKADMERAVPMDRLVC
GDVGYGKTEIAVRAAFKAIQDGTQVAVLCPTTLLVQQHLNTFSERYAGFPVTVKALSRFQ
SDAEARAVLAGLADGSVDLVIGTHRLLSREVRFKNLGLVVVDEEQRFGVEHKEQLKALRT
SVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGAYDEKTVTAAIRRELL
REGQVFLVHNKVSTIERAAARIRELVPEARVATAHGKMGEHKLEQVVVDFWEKRFDVLVC
TTIVETGLDISNANTLIVERADRLGLSQLHQLRGRVGRGRERAYSYFLYPPETPLTETAL
DRLQTIASNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRLVGEAVASFR
GEGEEAPAEIRIELPVDAHLPHDYVPHERLRLEMYKKLAAVVDEAQLAEIEGELVDRYGP
VPEPVRNLLEVARLRTVAREAGVADISLQGNHVRFGPVELRESQQLRLQRVYPRSILKAA
THSLLVPAPRTAAVGGRPLRDRDILEWAAEVLRAVVMDNVGAAARAASAPARG
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgccctccctcgccccggtgcgatcgcacctcgccgcgctcccgcagctgaccaccctc
tccgacgctctcgccgtgccggcggccgcggtggaggcgtacgcccccgccggcgcccgc
ccggccgtcgtctccgcgctcagccctcgccccggtggcgcccccgtgctcgcggtgtgc
gcgaccgggcgcgaggccgaggacctccacgccgggctcgccgcgaccctcggggaggac
gccgtcgggctgttcccctcgtgggagaccctgccgcacgagcggctcagcccgcgcagc
gacaccgtggggcagcggctctcggtcctgcgccggctggcgcaccccgatgcgggtgac
gccacccacgggcggctggccgtcgtcgtcgcgcccgtccgcgccgtcctccagccggtc
gccaaggggctcggcgagctgcgcccggtcgcgctcgccgccggcgacgaggtgccgctc
gagcgcatcgtcgaggacctcgccgcggcggcctacgcccgggtcgacctcgtcgagcgt
cgtggcgagttcgccgtccgtggaggcattctcgacgtctttccgcccaccgaggagcac
ccgctgcggatcgagatgtggggggacaccgtcgaggagatccgctggttcaaggtggcc
gaccagcgctccctggaggtcgccgagcacgggctgtgggcacctccgtgtcgcgagctg
ctcctcacgcccgccgtccgcgaacgtgccgccgccctcgccgaccagctccccggggtc
gccgacctgctcgagaagctggcccaggggatcgcggtcgagggcatggaggcgctctca
cccgcgctcgtcgacggcatggagaccctgctggaggtcatgcccccgggctcggtgctc
gtcgactgcgacccggagcgggtgcgcacccgtgcccacgacctcgtctcgacgagcgag
gagttcctccaggccgggtgggcgaacgcggccgggggcagcgcggtgcccatcgacctc
gaggcggtcctcggcaccgcctccttccgcacgatcgccgagctgcgtgagcaggcccga
gacctcggcctcggctggctcgacctcacccccttccccggcgacggcgcggacgacgtg
ctcgacctcgggctcgcgcccgcacccacgttccggggcagcaccgaggacgccgtggcc
gagctgcgccgcctcgtcgggcaggactgggcggtgctcgccgccaccgaggggccgggc
ctggcgcagcgcgtctgcgaggtcctcgccgagcacgaggtccgctgccggctcgtgccc
gggcaggccgagccggagccgggcgtggtcatcgtgaccaccggggcagtcggccacggc
ttcctcgcgcccgacgagcggctcgccgtcatcaccgaggccgacctcaccggcgcggcc
ggcggctccggcacctcgaccaaggacatgcggcggatgccctcccgccgccgcaaccag
gtcgaccccctccagctgcgcccgggcgacttcgtcgtccacgagcagcacggagtgggg
cgcttcgtggagatgatgcagcgcacggtccagggcgccacccgcgagtacctcgtcctc
gagtacgccgcctccaagcgtggccagccgggggaccggctctacgtccccaccgaccag
ctcgaccaggtgacccggtacgtcggcggggagcagccgacgctgaacaagatgggtggc
tcggactggcagcagaccaagggccgcgcccggcggtacgtcaagcagatcgccgccgag
ctcatccggctctactccgcccggatggcgaccaccggccacgccttcgggccggacacc
ccgtggcagcgcgagctcgaggacgccttcgcgcacgtcgaaacccccgaccagctgagc
acgatcgaggaggtcaaggccgacatggagcgcgccgtgcccatggaccgcctcgtctgc
ggcgacgtgggctacggcaagaccgagatcgcggtccgggcggccttcaaggcgatccag
gacggcacgcaggtggccgtgctctgccccaccaccctgctcgtccagcagcacctcaac
accttctccgagcgctatgccggcttcccggtcaccgtcaaggcgctctcccgcttccag
agcgacgccgaggcccgggcggtcctcgcaggcctggccgacggctcggtcgacctcgtc
atcggcacccaccgactcctctccagggaggtccgcttcaagaacctcggcctcgtcgtc
gtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctcaaggcgctgcgcacc
tcggtcgacgtcctcgccatgtcggcgaccccgatcccccgcaccctcgagatggcggtc
accggcatccgcgagatgtccacgctcgccaccccgcccgaggagcgccacccggtgctc
acctacgtcggcgcctacgacgagaagacggtgaccgccgccatccgacgcgagctgctg
cgagagggccaggtcttcctcgtccacaacaaggtctcgacgatcgagcgtgccgccgcc
cgcatccgcgagctcgtccccgaggcccgggtggcgacagcgcacgggaagatgggcgag
cacaagctcgagcaggtggtggtcgacttctgggagaagcggttcgacgtgctcgtgtgc
acgacgatcgtcgagaccgggctcgacatcagcaacgccaacaccctgatcgtcgagcgg
gccgaccggctcggcctcagccagctgcaccagctgcgcggacgggtcggccgcggccgg
gagcgggcgtactcgtacttcctctacccgcccgagacgccgctcaccgagaccgcgctc
gaccggctgcagaccatcgcgagcaacaccgacctcggtgccggcatgcaggtggcgatg
aaggacctcgagatccgcggcgcgggcaacctgctcggcggcgagcagtccgggcacatc
gccggggtcgggttcgacctctacgtccgcctcgtcggggaggccgtggcctccttccgg
ggcgagggcgaggaggcgccggccgagatccggatcgagctgccggtcgacgcccacctc
ccgcacgactacgtgccgcacgagcggctgcgcctcgagatgtacaagaagctggccgcc
gtcgtcgacgaggcgcagctggcggagatcgagggcgagctggtcgaccgctacgggccg
gtgcccgagccggtgcgcaacctcctcgaggtggcccggctgcggaccgtggcgcgcgag
gccggggtcgccgacatcagcctccagggcaaccacgtgcgcttcggtccggtggagctg
cgcgagagccagcagctgcgcctgcagcgcgtctacccgcggtccatcctcaaggccgcg
acacacagcctgctcgtccccgcgccccgcacggccgcggtgggtggccgccccctgcgc
gaccgtgacatcctcgagtgggccgccgaggtcctccgcgcggtcgtcatggacaatgtc
ggtgcggccgcccgcgccgcgagcgcccccgcccgggggtga
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