Pedobacter aquae: FYC62_00140
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Entry
FYC62_00140 CDS
T06312
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pej
Pedobacter aquae
Pathway
pej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYC62_00140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pej03019
]
FYC62_00140
03009 Ribosome biogenesis [BR:
pej03009
]
FYC62_00140
Enzymes [BR:
pej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FYC62_00140
Messenger RNA biogenesis [BR:
pej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FYC62_00140
Ribosome biogenesis [BR:
pej03009
]
Prokaryotic type
rRNA helicases
FYC62_00140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QEK50247
UniProt:
A0A5C0VDR5
LinkDB
All DBs
Position
27867..29723
Genome browser
AA seq
618 aa
AA seq
DB search
MNPFNELGIRHDIVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLP
LLELIDYSKNHPQALILCPTRELCLQISNDLKNYSKNLPNVNIVAVYGGANIVNQLRDIK
RGVQIVVATPGRMLDILNRKAIDFSQVKYVVLDEADEMLNMGFQDDINDILSTTPDTKKT
WLFSATMPKEVRAIANNYMTNPHELTMGTKNTGNVNIEHEYYIVKARDKYAAFKRIVDFN
PEIFGIVFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVSDVTHVINYSLPDEIENYTHRSGRTGRAGKTGISIAIINSKELYKIRQIEKV
IGKQFTKAEIPTGFDVVEKQLFGLVHKVHNVEVNDSQIEQYLPRIMDEFKDLTKEDVIKR
FASLEFNRFLDYYKNAPDLNTASDERGGRERDGGRAGQSGFTRLFINLGSVDDFTRGDLL
GYICNNAGISGKSVGKIDMKGVFSFFEVENEIAEKVIEGFKKVDFHGRDVRIEVSGEGKS
ERRGGGGGGSRGGDRERKSYGGGGSRSGGGERRERSDRGGERSSGGGGFRDFSGKRKEGG
SGSGGERRPSSGERKRRY
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaacccattcaatgaattggggatacgacatgatattgttaatgcgataactgagtta
ggttttaccaacccaactccaatccaggaaagtgccattccagttttgttatcaggcagc
aacgattttgtcggattagcccaaacaggaacaggaaagacagccgcatttggccttcct
ttattagaactgatcgactacagtaaaaatcacccacaagcacttattctttgcccaaca
cgtgaactttgcttacaaatcagtaacgatttaaaaaattattctaaaaaccttcctaat
gttaatatagttgcagtttacggtggtgcaaacatcgtaaaccaattaagagacattaaa
agaggcgtacaaattgtggtggcaacacctggtcgtatgctagacatccttaacagaaaa
gctattgatttctctcaagtgaaatatgtagttttagatgaagcagatgagatgttaaac
atgggttttcaggatgatattaacgatatcctttctacaaccccagacaccaagaaaacg
tggttgttttctgctactatgcctaaagaggttagagcaattgctaataattacatgacc
aacccacatgagttaaccatggggacaaaaaacactggtaatgttaatattgagcatgag
tattacattgttaaagctagagataaatacgcagcttttaaacgtattgtagattttaac
ccagagatttttggtattgtattttgtcgtactaaaatagaaactcaagaaattgcagaa
tctttagtaaaagatggttacaatgcagattctttacacggagatttatctcaacaacag
cgtgataaagtaatgaagcgttaccgcgatagaagtttgcaattattaattgctactgat
gttgctgcccgtggtattgatgttagcgatgttacacacgttatcaactattctttacct
gatgagatagaaaactatacacacagaagtggtagaacaggaagagctggtaaaacaggt
atttctattgccattatcaattcaaaagaattatataaaatacgccaaatagaaaaagta
attggtaagcaatttacaaaagcagaaattccaactggttttgatgttgttgagaaacaa
ttatttggtttggtacataaagttcataatgtagaagttaatgattctcaaatagaacaa
taccttcctaggattatggacgagtttaaggatttaactaaagaagacgttattaaacgt
ttcgcatctttagagtttaacagattcttagattattacaaaaatgctccagatttaaat
actgcttcagatgagcgtggcggtagagaaagagatggcggcagagcaggacaaagtgga
tttacacgtttgtttatcaaccttggctctgttgatgattttacaagaggagatctttta
ggttatatctgtaataatgcaggtataagcggcaaatctgttggtaaaatagatatgaaa
ggtgttttctctttctttgaagtagaaaatgaaattgcagagaaagtaattgaaggcttc
aaaaaagtagatttccacggtagagatgtacgaattgaagtttctggagaaggaaaaagt
gagagaagaggcggcggcggcggtggtagtcgtggtggagacagagagagaaaaagctat
ggcggtggcggtagcagaagtggtggcggcgagcgaagagaaagaagtgatagaggagga
gaaagaagcagcggcggcggcggatttagagatttttctggcaaaagaaaagaaggtgga
agcggtagtggcggagaaagaagaccttctagcggagaaagaaaaagaagatattaa
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