Pedobacter aquae: FYC62_01340
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Entry
FYC62_01340 CDS
T06312
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pej
Pedobacter aquae
Pathway
pej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYC62_01340 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pej03019
]
FYC62_01340 (rny)
Messenger RNA biogenesis [BR:
pej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FYC62_01340 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Ribosomal_S18
Motif
Other DBs
NCBI-ProteinID:
QEK50462
UniProt:
A0A5C0VF22
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All DBs
Position
300102..301664
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AA seq
520 aa
AA seq
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MEIMIYLAIAIVAFGGGVLTGRVLLRQLLKQQEVAAQSKVKKILKDAENNAEILKKNKLL
EAKEKFLQMKADHEQEINQKNIAISQRENTLKQKEQSLNQKLENQTRKEQELDNLKKKLE
QQTEIVVKKQEEVEAIKNQHIKELETIAGLSAEEAKTQLETNLKEEARTNAMAQIKDIVD
EAKMTAAKEAKKVVIQTIQRTATESAIENTVSIFNIENDEIKGRIIGREGRNIRALEAAT
GIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEVVAKTQKQIEEEII
EIGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFCATMASELGLNAKL
AKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPEVCNAIGAHHDEIEMTSMISPII
QACDAISGARPGARREVVESYIRRLKELESLALSYPGVEKTFAIQAGRELRVVVESEKIS
DAQSEILAADISNRIQTEMTYPGQIKVTVIRETRSVAYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggagataatgatttacctcgctattgcaattgttgcttttggtggaggagttttaaca
ggaagagtactacttcgtcagctgcttaaacagcaagaagtagcagcacagtctaaagta
aagaagattttaaaggatgctgaaaataatgctgaaatcttaaaaaagaataaattatta
gaagctaaagagaaattcttgcaaatgaaagcagatcacgagcaagaaatcaatcaaaaa
aatattgccatttcacaaagagagaacactttaaaacaaaaggaacagtctctcaatcag
aaattagaaaatcaaaccagaaaagagcaagagcttgacaatcttaaaaagaagttagag
caacaaacagaaattgttgttaaaaaacaagaagaggttgaggctatcaaaaatcaacat
atcaaagaattagaaactattgctggtttatctgctgaggaagctaaaacgcaactagaa
actaatttaaaagaagaagccagaaccaatgccatggctcaaattaaagatattgttgat
gaagccaaaatgactgctgctaaagaagctaaaaaagtagttatacaaaccattcaacgt
acagctacagaatctgctatagaaaatactgtgtctattttcaatatcgaaaatgatgaa
attaaaggtagaattataggtagagaaggcagaaatatcagagctttagaagctgcaaca
ggtatagaaattattgttgatgatacgccagaggctattatactttctggttttgaccct
gtaagaagagaaattgcccgtttagcgcttcaccgtttggtaacagacggacgtatacac
ccagccagaattgaagaggtggtagccaaaactcaaaaacaaattgaagaggaaattatt
gagataggcgagcgtaccgtaattgatttaggtatacatggcttacacccagagttgata
agaatggtgggcagaatgcgttaccgctcttcttacggacagaatttgttacaacactct
agagaggtagcaaatttctgcgctaccatggcatcagaacttgggttaaacgctaaactt
gcaaaaagagccggattattacatgacataggtaaagtgcctgatgataacccagaattg
ccacacgcaattttaggtatgcagctagcagaaaaatataaagaacatcctgaagtttgc
aatgctattggtgcacaccatgatgagatagaaatgacttctatgatatctcctattatc
caagcttgcgatgccatttctggtgcaagaccaggtgcaagaagagaggtagtagaaagc
tatatcagaagactaaaagagttagaaagcttagctttatcttaccctggcgtagagaaa
acttttgctatacaagcaggtagagagctaagggtagtggtggaaagtgaaaaaataagt
gatgcgcaatctgaaattttagcagctgatatctctaacagaattcaaactgaaatgact
tatcctggtcaaattaaggttacggttatcagagaaaccagatctgtagcttacgcgaaa
taa
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