Pedobacter aquae: FYC62_01495
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Entry
FYC62_01495 CDS
T06312
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pej
Pedobacter aquae
Pathway
pej03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FYC62_01495 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pej03021
]
FYC62_01495 (rpoC)
03400 DNA repair and recombination proteins [BR:
pej03400
]
FYC62_01495 (rpoC)
Enzymes [BR:
pej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FYC62_01495 (rpoC)
Transcription machinery [BR:
pej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FYC62_01495 (rpoC)
DNA repair and recombination proteins [BR:
pej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FYC62_01495 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QEK50487
UniProt:
A0A5C0VEK1
LinkDB
All DBs
Position
325447..329739
Genome browser
AA seq
1430 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLSSPEAILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQSGLMADQGINYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLRRLDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGS
KGRIENNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLMEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSGRSVIVVGPTLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGNAAVLEAQILMLASHNILNPANGTPVTVPSQDMVLGLYYMTKGRKSEPGHQVR
GEGSIFYSSEEVTIAYNEKQIDLHAFIKVKAKVKGKDGVIEAKTIETTVGRVLFNEVVPE
EVGFINELLTKKSLRDIIGEVVKVTGMARAANFLDEIKTMGFQYAFRGGLSFNLKDLNIP
TEKHTLLEQARKEVEEVMNNYNMGFITNNERYNQIIDIWTRINNKLTSHVMHQLTNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMVIKAHDCGTLRGMFTTALKDNEDIVE
PLYDRILGRTSLHDVYHPLTNELLVGANEDITEEIAKTIEESPLEGVEIRSVLTCESPRG
VCALCYGRNLASGKRVQMGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAK
FDGVIEFENIRTVDYDTEEGKVEVVLGRSGEFKIVDPNSGRVIVTNNIPYGSYLYVKEGA
KLTKGDKICSWDPYNAVIISEFSGKVEFESVIEGVTFREESDEQTGHREKVIIDTRDKTK
NPVVKIVDKKGGSIREYNIPVGAHIVVDEGDEVKMGEILVKIPRTTGKTRDITGGLPRVT
ELFEARNPSNPAVITEIDGVVTLGGVKRGNREVTIESRDGQVKKYLVPLSKHILVQDNDF
VKAGMALSDGATSPGDILSIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFETIVHQMMQK
VMIEDAGDTKFLEKEAVDRFDFSIENDSIYDKMVVEDPGDSNALKPGQIISVRKLRDENS
QLKRKDLKLVTAREARPATASPMLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NLLGLKENVIVGHLIPSGTGLRDYERIIVGSQEEYDKLMASKEEEEEVEA
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaataaaaagtaattttacctccattaccataagctta
tcttctcctgaagcaattttggaaagatcaagtggtgaggtattaaagcctgagacaatc
aactacagaacctataaaccagaacgtgatggtttattttgcgagcgtatttttggtccg
gtgaaagattacgaatgccattgcggtaaatataagcgtattcgttacaaaggaatcgtt
tgtgaccgttgcggtgttgaggttacagagaaaaaagtacgtcgtgagcgtatgggacac
attaaccttgttgttcctgttgcccatatctggtattttagatctttacctaacaaaatt
ggttacttattaggtttgccaactaaaaaattagatttaatcatttactacgaacgttat
gtagttattcaatctggtttaatggcagatcaaggtatcaattacatggacttcttaaca
gaagaagaataccttgatatcttagataaattacctaaagaaaatcagtatttggatgat
aaagatccaaataaattcatcgctaagatgggtgctgaggctttagaagatttattaaga
cgtcttgatttagatactttatcttacgatttacgtcatcaagctgctaacgaaacttct
cagcaacgtaaaaacgaagctttaaagcgtttacaagtagttgaagctttccgtggatct
aaaggtcgtatagagaataatccagagtggatgattgttaagattgttccggttattcca
ccagaattacgtccattagtgcctttagaaggtggtcgttttgcaacttcagatttaaat
gatctatacagaagggttattatccgtaataaccgtttaaagagattaatggaaattaaa
gctccagaagtaatcttacgtaacgaaaaacgtatgttacaagaagctgttgattcatta
tttgacaactcacgtaaagtgaatgctgttaaaactgaaggtaacagagctttaaaatca
ttatcagatatattaaaaggtaagcaaggacgtttccgtcaaaacttactaggtaaacgt
gtggattattctggtcgttctgtaattgtggtaggtcctaccttaaaattacatgagtgt
ggtttacctaaagatatggcagcagagctatttaaaccatttatcatccgtaagatgata
gagaggggagtagttaaaactgttaaatctgcaaagaaaattgtagatagaaaagaccct
ctagtttgggatattttagagaatgtattaaaaggacatccggttcttttaaacagggct
cctacacttcaccgtttaggtatccaggcattccaacctaaattagtggaaggtaaagct
atccaattacacccattagtttgtactgcatttaacgcggattttgacggtgaccagatg
gctgttcacgtaccactaggtaacgctgctgttttggaagcccaaatcttgatgttagca
tcgcacaacattcttaacccagctaacggaactccggtaacggtaccttcgcaagatatg
gttcttggtttatactacatgactaaaggtcgtaagtctgagccaggacatcaagtaaga
ggtgaaggttctattttctattcttcagaagaggtaactattgcctacaatgagaagcaa
atagatttacacgcttttattaaagtaaaagctaaggttaaaggtaaagatggtgtaata
gaagctaaaactatcgaaaccacagttggtagggtattatttaatgaagtagtaccagaa
gaggtaggtttcattaatgaattgctaactaagaaatctcttagagatatcattggagaa
gtggtaaaagttactggtatggctagagctgcaaacttcttagatgaaattaagactatg
ggattccagtatgctttcagaggaggtttatctttcaacttgaaagacttaaatatccct
acagagaaacatactttattagagcaagctcgtaaagaagttgaagaggtaatgaataac
tataacatgggtttcattacgaacaacgaacgttacaaccaaatcatcgatatctggact
cgtatcaataacaaactgacatcgcatgtaatgcaccagttaactaacgataaccaagga
tttaactctgtttacatgatgttagattctggagctcgtggttctaaggagcaaattcgt
cagctttgtggtatgaggggattgatggcaaaaccgcaaaaatcaggttcaggtggtgag
attattgagaacccaattctttctaactttaaagaaggtttatcagttcttgagtacttt
atctcaacccacggtgctcgtaaaggtcttgcggatacagcgttaaaaactgctgatgct
ggttacttaactcgtcgtttacatgacgttgcacaggatatggttattaaagcacacgat
tgtggtactttaagaggtatgttcactacagcgttaaaagataacgaggatattgttgaa
ccactatacgatagaattttaggtcgtacttcattacacgatgtttaccatccattaacc
aatgaattgttagttggtgctaatgaagatattactgaagaaatcgctaaaacaatagaa
gaatctccattagagggagttgaaattcgttctgtattaacttgtgagtctccaagaggg
gtttgtgcattatgttacggaagaaacttagcttcaggtaaacgtgttcagatgggtgag
gcagttggagtaattgcagcacagtctattggtgagccaggtacacagttaacgcttcgt
actttccacgtgggtggtactgcatctaacattgcagcagaatctcaaatcaatgctaag
tttgatggtgttatcgagtttgaaaacatcagaacagttgattacgatacagaagaaggc
aaagttgaggttgtattaggtcgttctggagagtttaaaattgttgatccaaatagcgga
agagttattgttacaaataatatcccttacggttcttatttatatgttaaagaaggagct
aaattaactaaaggagataagatttgttcatgggatccatacaatgcagttattatatct
gagttctctggtaaggttgaatttgaatcggttatagaaggtgttaccttccgtgaagaa
tcagatgagcaaactggacacagagagaaagtgatcattgatactagagataaaactaaa
aaccctgttgttaaaattgttgacaaaaaaggtggttctattagagaatataacattccg
gtaggagcgcatattgttgtagacgaaggagacgaagttaaaatgggtgaaatcttagtt
aagattcctcgtacaactggtaaaacaagagatattacaggtggtttacctcgtgtaacc
gaattatttgaagctagaaacccatctaacccagctgttattacagagattgatggtgta
gtaactttaggaggtgttaaacgtggtaaccgtgaggtaactatagaatctagagacgga
caagttaaaaaatacttggtgccattatctaaacatattttagtacaggataacgacttt
gttaaagctggtatggcattatctgatggagcaacttctccgggtgacatcttatcaatt
aaaggtcctgcggctgtacaagagtatcttgttaatggaattcaagaggtttaccgttta
caaggtgtgaaaattaacgataagcactttgagactattgttcaccaaatgatgcagaaa
gtaatgattgaggatgctggtgatacgaaattcttagaaaaagaagcggtagatagattt
gatttctctatagagaatgatagtatctatgataagatggtagttgaagatccaggagat
tctaatgctttaaaaccaggtcagattatttctgtacgtaaattacgtgatgagaactca
caattgaaacgtaaagatttgaaactggttactgcaagagaggctcgtccggcaacggca
agtccaatgctacaaggtattactagagcatctttaggtactaaatcatttatttcagct
gcatcgttccaggaaactactaaagttcttaacgaagctgcaattgctggtaaacgtgat
aatctattaggattgaaagaaaacgtaattgttggtcacttaatcccgtctggtacaggt
ttaagagattacgaaagaattattgttggatctcaagaagaatacgataaattaatggcc
tctaaagaagaggaagaagaggttgaagcatag
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