KEGG   Pedobacter aquae: FYC62_04225
Entry
FYC62_04225       CDS       T06312                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pej  Pedobacter aquae
Pathway
pej02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pej00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    FYC62_04225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pej03021]
    FYC62_04225
Transcription machinery [BR:pej03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     FYC62_04225
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_ECF GerE HTH_11 Sigma70_r2 HTH_38 HTH_24 PF0610-like_N HTH_40 HTH_23 UPF0122 HTH_10 Acm1_Central HTH_36 DUF134 HTH_17 HTH_28 DUF8630
Other DBs
NCBI-ProteinID: QEK50970
UniProt: A0A5C0VIE1
LinkDB
Position
complement(954647..955243)
AA seq 198 aa
MLGYDKLTDNELWKLIKQHDQKAFRALFDMYWSKVFTTAFRYLKDKDACTEIVNDLFLNI
WNKREQLEIESLQAYLTSSARYHVYKKLKAIKTSPLELVENYDLLDDKADNANPIDDKIK
YLDLENRIDSYLTALPKRCREIFIMSRKENLSNDEIAQKLNISKRTVENQLTHALKHLRN
ALKDLSIILVLLRIMDNY
NT seq 597 nt   +upstreamnt  +downstreamnt
atgctaggatacgataaactgacggataacgaattatggaaacttataaaacagcatgat
caaaaggcttttagagctttgtttgacatgtattggtctaaagtttttactacagctttc
aggtatttaaaggataaagatgcttgtacagaaattgtgaatgatttatttctgaacatc
tggaacaagagagaacagctagaaatagaatctttacaagcttatttaacaagttctgca
agatatcatgtttataaaaaattaaaggctataaaaacatctccgttagagttggtagaa
aattacgacctgcttgatgataaagctgataacgccaaccccatagacgataaaataaag
tatttagaccttgagaaccgaatagatagctatttaaccgccttacctaaaagatgtagg
gaaatatttatcatgagtagaaaagaaaatctctctaatgatgaaattgcccaaaagcta
aatatttctaaacgtacggtagaaaaccagcttacccacgctttaaaacatttaagaaat
gctttaaaagatctatccattatcctggttttactcagaataatggataattattag

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