Pedobacter aquae: FYC62_04225
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Entry
FYC62_04225 CDS
T06312
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pej
Pedobacter aquae
Pathway
pej02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FYC62_04225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pej03021
]
FYC62_04225
Transcription machinery [BR:
pej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FYC62_04225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
GerE
HTH_11
Sigma70_r2
HTH_38
HTH_24
PF0610-like_N
HTH_40
HTH_23
UPF0122
HTH_10
Acm1_Central
HTH_36
DUF134
HTH_17
HTH_28
DUF8630
Motif
Other DBs
NCBI-ProteinID:
QEK50970
UniProt:
A0A5C0VIE1
LinkDB
All DBs
Position
complement(954647..955243)
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AA seq
198 aa
AA seq
DB search
MLGYDKLTDNELWKLIKQHDQKAFRALFDMYWSKVFTTAFRYLKDKDACTEIVNDLFLNI
WNKREQLEIESLQAYLTSSARYHVYKKLKAIKTSPLELVENYDLLDDKADNANPIDDKIK
YLDLENRIDSYLTALPKRCREIFIMSRKENLSNDEIAQKLNISKRTVENQLTHALKHLRN
ALKDLSIILVLLRIMDNY
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgctaggatacgataaactgacggataacgaattatggaaacttataaaacagcatgat
caaaaggcttttagagctttgtttgacatgtattggtctaaagtttttactacagctttc
aggtatttaaaggataaagatgcttgtacagaaattgtgaatgatttatttctgaacatc
tggaacaagagagaacagctagaaatagaatctttacaagcttatttaacaagttctgca
agatatcatgtttataaaaaattaaaggctataaaaacatctccgttagagttggtagaa
aattacgacctgcttgatgataaagctgataacgccaaccccatagacgataaaataaag
tatttagaccttgagaaccgaatagatagctatttaaccgccttacctaaaagatgtagg
gaaatatttatcatgagtagaaaagaaaatctctctaatgatgaaattgcccaaaagcta
aatatttctaaacgtacggtagaaaaccagcttacccacgctttaaaacatttaagaaat
gctttaaaagatctatccattatcctggttttactcagaataatggataattattag
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