Pedobacter aquae: FYC62_05310
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Entry
FYC62_05310 CDS
T06312
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pej
Pedobacter aquae
Pathway
pej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYC62_05310 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pej03019
]
FYC62_05310 (recQ)
03400 DNA repair and recombination proteins [BR:
pej03400
]
FYC62_05310 (recQ)
Enzymes [BR:
pej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FYC62_05310 (recQ)
Messenger RNA biogenesis [BR:
pej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FYC62_05310 (recQ)
DNA repair and recombination proteins [BR:
pej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FYC62_05310 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
FANCI_HD1
Motif
Other DBs
NCBI-ProteinID:
QEK51156
UniProt:
A0A5C0VF82
LinkDB
All DBs
Position
1209416..1211605
Genome browser
AA seq
729 aa
AA seq
DB search
MQIKKSLIDNLQTFFGFDNFKGDQEAIITSILEKKDTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGYDSIAHFLNSSLTKTEITKVKEDVTAGQTKLLYVAP
ESLTKQENIDFLKSITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINNIRENIPVIALTA
TATPKVQHDIQKNLQMTKANIFKSSFNRPNLYYEVKPKSDVLKEIIRYVKSNLGKSGIVY
CLSRKKVEEVANALEINGVKSLPYHAGLDPKVRADTQDKFLMEDVDVIVATIAFGMGIDK
PDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGHCLAFYSDKDVEKLAKFMKDKPVSEREI
GTQILKEVIDYSESAVCRRKQILHYFGENFNEAGCNNMCDNCRAQKQSFNAEEHLSKVLN
MVQEFGEKFDDHYVINVLMGQETAQIQSYKHHQSSYFASGKAEGLFLWKSVLRQAVLNNF
LAKDVDNFGLLRLTKNGQSYLTSPYALRFVMNRPMDIPEKDDDSAVQHGSGALDTQLLQM
LKDLRKKIAKQKNLPPFVIFQDPSLEEMCTHYPINMDELKHISGVGNGKASKFGTPFIEL
INKYVEDNDIDRPIDFVVKTTANKSALKVSIIQNIDRQISLEDIAASKGITYEEILKEVE
SIVSSGTKLNLNYFIDEVIDEDRQDEVFDYFKTAEVDSIDKALEDLGSDDYNREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcagattaaaaaatcattaattgataatttacaaacgttttttggctttgataatttc
aaaggagaccaggaagctattataaccagtatcttagaaaagaaggatacctttgttatt
atgccaactggaggcggtaaatctatctgttaccagttaccagcgcttatgagcgaaggt
acagcaattgttatctctccgttaattgccttgatgaaaaatcaggttgaccaattaagg
gcttttggaggttatgatagtattgcgcactttttaaattcatctttaaccaaaacagaa
atcacaaaagttaaagaagatgtaactgctgggcaaaccaagctcttatatgttgcgcca
gaatctttaacaaaacaagaaaatatagacttcttaaaatctataacggtttcttttgtg
gctgtagatgaagcccattgtatatcagaatggggacatgattttagacctgagtacaga
aaaatccgtcaggtaatcaataatattagagaaaatatacctgttattgctttaacggca
acagcaacaccaaaggtacagcatgatattcagaagaatttgcagatgactaaagcaaat
atcttcaaatcatcttttaaccgccctaatctttattacgaggtaaaacctaaatctgat
gttttaaaagaaatcatcaggtatgtaaaaagcaatcttggaaaatctggtattgtttac
tgtttaagccgtaaaaaggttgaagaggtagctaatgctttagagataaatggtgttaaa
tctttaccctatcatgctggtttagaccctaaagtaagagccgatacacaagataaattc
ttgatggaagatgtggatgtaatagtggctaccattgcctttggtatgggtatagataaa
cctgatgtacgatatgtgatacaccatgatattcctaaaagtatggaaggctattaccaa
gaaacgggtagggcaggtagagatggaggagaagggcattgtttagctttctattctgat
aaagacgtagaaaagctagctaagtttatgaaagataagcctgtttctgaaagagaaata
ggtacgcaaatattaaaagaagttatagattactctgaatctgccgtttgtagaagaaaa
caaattctgcattattttggagaaaactttaacgaggcaggttgtaacaatatgtgtgat
aactgccgggcacaaaaacaatcttttaatgctgaagagcatttaagtaaagtgctaaat
atggtgcaagaatttggcgaaaagtttgacgaccattatgtcattaacgtattgatggga
caagaaaccgcacaaattcagtcttataagcatcaccaatcctcatattttgcttctggc
aaagcagaaggcttatttttatggaaatctgttcttagacaagctgttttaaataatttc
ttagctaaagatgtagataattttggtttgttaaggttaaccaaaaacggtcagtcttac
cttactagtccttacgctttaaggtttgtgatgaacagacctatggatatccctgaaaag
gatgatgattcagctgtgcaacatggtagcggcgctttagatacgcagctcttgcagatg
ttaaaagacttaaggaagaaaatcgctaagcaaaaaaatctgcctccttttgttatcttc
caagatccatctttagaagaaatgtgtacgcattatcctatcaatatggatgagctgaaa
catatctctggcgttggtaatggtaaagcttctaaatttggaactccttttatagaactg
atcaataaatatgttgaagataatgatattgataggccaatagattttgttgttaaaaca
acagctaataaatctgctttaaaggtttctatcatccaaaatattgacagacaaatttct
ttagaagatatagcggcgtctaaaggcattacttatgaagaaatactgaaagaagtagaa
tctattgtaagttctggtaccaagttaaacttgaactattttattgatgaggttattgat
gaagatagacaagacgaagtatttgattactttaaaaccgcagaagtagactctattgat
aaagctttagaagatttaggttctgatgattataaccgcgaagaaatacaattaatgaga
atcaagtttatgtctgagttaggaaactaa
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