Pedobacter aquae: FYC62_09455
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Entry
FYC62_09455 CDS
T06312
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pej
Pedobacter aquae
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pej03009
]
FYC62_09455 (rlmD)
Enzymes [BR:
pej01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FYC62_09455 (rlmD)
Ribosome biogenesis [BR:
pej03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FYC62_09455 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
PrmA
Methyltransf_11
N6_Mtase
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QEK51846
UniProt:
A0A5C0VH25
LinkDB
All DBs
Position
complement(2168622..2170019)
Genome browser
AA seq
465 aa
AA seq
DB search
MGEQKILEQLEVFDIAEEGKGVARHQDLVVFIEKAIPGDVVDAAVYKKKKKFAEAKVHTL
HQPSADRVTPFCVHFGTCGGCKWQHMDYSAQLKYKQKSVTDALQRLAGLDVAHTEPILAS
AETTYYRNKLEYTFSNKRWLTQEDVASGEAMEMNALGFHVPLRFDKILDVQHCWLQASPS
NEIRNSIRDFALANQISFYDLRAHEGALRNLIIRTSSTGELMIVMVFAYPEEGQVELLMD
FVKASFPQVNSLMYIINQKKNDTIFDQDILLYHGQPFIYEEMEGLKFRIGPKSFYQTNSL
QAYELYKITRDFAGLTGKELVYDLYTGTGTIANFVAKDAKEVVGVEYVPTAIEDAKVNSQ
INGINNTKFYAGDMKDVLNAEFIAQHGKPDVVITDPPRAGMHPDVVERLMEMEADKIVYV
SCNAATQARDLLRLKEKYEVSRIKPVDMFPQTQHVENVVLLELKK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgggcgaacaaaagatattagagcaattagaagtttttgacattgcagaagaaggtaaa
ggtgtagcaagacatcaagatttggtggtttttatagaaaaagctatccctggtgatgtt
gtagatgccgcagtttataaaaagaagaaaaaatttgctgaggccaaggtgcatacgcta
catcaaccatcggcagatagggtaacacctttttgtgtacactttggaacttgcggaggc
tgcaaatggcagcacatggattatagcgcacagttaaaatacaagcaaaaatctgttact
gatgctttgcaaaggcttgcaggtttagatgttgcacataccgagcctattttagcatcg
gcagaaactacttattaccgtaacaaattagaatatacattttctaataaaagatggtta
acccaagaagatgttgcctctggcgaagctatggaaatgaatgctttaggttttcatgta
cctcttcgttttgataagattttagatgttcagcattgctggcttcaggcttctccttct
aatgaaattagaaacagcatccgcgattttgctttagctaatcaaatttctttttacgat
ttaagagctcatgaaggtgcgttaagaaatttaatcatcagaacttcttcaacaggagaa
ctgatgattgtgatggtttttgcttatccggaagaagggcaagtagagcttttgatggat
tttgtgaaagctagttttcctcaggtaaattcgcttatgtacatcatcaaccaaaagaaa
aatgacaccatttttgatcaagatattttattataccacgggcagccttttatttatgaa
gaaatggagggcttgaagttcagaatcgggcctaaatcattttaccaaaccaactcttta
caagcttatgaattgtataaaataacgcgtgattttgcaggtttaacaggtaaagaattg
gtttacgatttgtataccggtacaggtaccattgccaattttgtagcaaaagatgctaaa
gaagttgttggggtagagtatgtgccaacggccatagaagatgcaaaggtaaactcacaa
attaatggtataaacaatacgaagttttatgctggcgatatgaaggacgttttaaatgcc
gaatttatagcccaacatggcaaacccgatgtggtgattacagaccctccaagggcgggt
atgcaccctgatgttgtagagcgcttaatggagatggaggctgataaaattgtttatgta
agctgtaatgcggctacacaggctagagatttgctgcgtttaaaagagaaatatgaagtg
agcagaattaaacctgttgatatgttccctcaaacgcagcatgtagaaaatgtggtttta
ttagaattgaagaaatga
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