Pedobacter aquae: FYC62_14255
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Entry
FYC62_14255 CDS
T06312
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pej
Pedobacter aquae
Pathway
pej03420
Nucleotide excision repair
pej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FYC62_14255
03430 Mismatch repair
FYC62_14255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pej03400
]
FYC62_14255
Enzymes [BR:
pej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FYC62_14255
DNA repair and recombination proteins [BR:
pej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FYC62_14255
MMR (mismatch excision repair)
Other MMR factors
FYC62_14255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_12
Dna2
AAA_30
DUF2800
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
QEK52692
UniProt:
A0A5C0VLB1
LinkDB
All DBs
Position
complement(3229340..3232513)
Genome browser
AA seq
1057 aa
AA seq
DB search
MHPQKKLSEDFSKAIAQLNEKQLQAVEQLEGPVLVIAGPGTGKTQILAARIGKILLDTDA
QANEILCLTYTDAGAVNMRQRLFKFIGPDAYRVNIFTFHAFCNEIIQENLDYFGKLNLEP
LSDLESALLFREIIDELPANHILKRFTGDIYYDAPRLKDLFSTMKRENWSVDIVIAAIEN
YLEDIKTRDEFIYKKANAKAGIKVGDLKQKKYDDAVEKMDKLKAAVMLYPVYLQKMDKKS
RYDYDDMILWVIKAFQENPDLLLLYQERYQYILVDEYQDTSGSQNQLLKQLISYWEVPNV
FVVGDDDQSIFRFQGANLKNILDFAGDYVSSLKTVVLLNNYRSTQHILDMSRSLIENNFI
RLTRELNLNKELKSSHPDIVGLQVRPQILSFENPEQESVWIAHQIESLIKNGTKASAIAV
IYRNHSQAEAMVTYLDKKKIGINTKRKIDILTLPFTEKIITILRYLSMELDSSYSGDEKL
FEILHYDFFNIQPIDIAKASIAVYKANFNEKVDKTSLRRYITELREPKQPGLFDAVDRPE
MKRLIEDIEYLLKAAASLTLQQLFQAIITKMGILTYIMKQPDKGWYMQILTNFFNFLKDE
NRKNPELKVAEFIELIDLMKKNNISIAFNQHIFSAEGVNFMTAHGSKGLEFEYVFLLGCS
KKIWDSKGRNFGFSYPDTLFKEGASSSDAEQENTEESRRLFYVALTRAKHSLFVTYPKLN
SSGKEQEASQFISEIISTGHYQEHKQAVTEEEMIDFYATQFSEAEKPQVTLIDKNYIDLL
LQNYTLSVTHLNNYLACPLKFYFQNLIRVPSGKSPAATFGQAVHHALNRAFIKMHENNET
FLATDDFMNDFSWWMNRNKDSFTREDFKLRMEYGYKILPDYYEQNISKWNKVVVTERKIR
NVEIEGVPITGNLDKIEFNGKMVNVVDYKTGKFKNAKPKFNKPSEEEPHGGDYWRQAVFY
RILIDNDRTKDWQVLSTEFDFIEPISDGEYHKEKVMIVAEDVETVKNQITSVYSKILSYE
FNTGCGKKDCEWCHFVRSNFKQTDGILEQIQAEDADI
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgcatccacaaaaaaaactaagcgaagatttttctaaagcaatagcacaacttaatgaa
aaacagctgcaagctgtagagcagttagaaggcccagttctggtaattgcaggcccagga
acaggaaaaacacaaattttagctgcccgtataggaaaaattttattagatactgatgca
caggctaatgaaattttatgcttaacctataccgatgctggtgcggtaaacatgcgtcag
cgtttgtttaaatttattggccctgatgcttaccgggtaaacatatttactttccatgct
ttttgtaatgagattatacaagaaaacctcgattactttggtaagcttaatttagaacct
ttatcagatttagaatcggctttacttttcagggaaattattgatgaattacctgctaac
cacatcctgaaaaggtttactggcgatatttactatgatgccccaaggttaaaagacctc
ttttctaccatgaaacgagaaaactggtcggtggacattgttattgcagccatagaaaat
tatctagaagatattaaaactcgcgatgagtttatctataaaaaagccaacgcaaaagca
ggtataaaagttggcgatttaaagcaaaagaaatacgatgatgccgtagagaaaatggat
aaactaaaagccgctgtgatgctttacccggtttatcttcaaaaaatggataaaaaaagc
cgttatgattatgacgacatgattttatgggtgataaaggcttttcaagaaaatccagat
ttacttttgctttaccaagagcgttaccagtatattttggttgatgaatatcaggataca
agcggctcgcaaaaccaattattaaaacaactcatcagctattgggaagtacctaacgtt
tttgttgtgggcgatgatgatcaatctatctttaggtttcaaggtgccaacctcaaaaat
atcttagattttgctggcgattatgtaagcagcctaaaaacggtagtcttgttgaataat
tatagatctacccaacatattctagacatgtctagaagcttaatcgagaataattttatc
cgtttaacacgggagcttaacttaaataaagagctaaaatcatcacatccagatattgtt
ggtttacaagttcgtccacagattttaagttttgaaaaccctgagcaggaaagcgtttgg
atagcgcatcagatagaatcactcatcaaaaatggcacaaaagcttcagcaatagcggtt
atctatcgcaaccatagccaagcagaagctatggtaacctatttagataaaaagaaaatc
ggtatcaataccaaaagaaaaattgatattcttacgctaccttttacagagaaaatcatt
accattcttaggtatttatctatggagctagactcgtcttatagtggtgatgaaaagctt
tttgaaatcttacattatgatttttttaatatccaacctattgatattgccaaagctagt
atagctgtttataaagccaattttaacgaaaaggttgataaaacatcgctacgcagatac
attacagagcttagagagcctaagcagcccggtttgtttgatgccgtagaccgcccagaa
atgaaacgcttaattgaggatatagaatatctgcttaaagcagctgctagccttacttta
cagcaactttttcaggccatcatcaccaaaatgggtattttaacctatatcatgaaacag
ccagataaaggctggtacatgcaaattctaactaatttcttcaatttcttaaaagatgag
aaccgtaaaaaccctgagttaaaagttgccgagtttatagagctgattgatttaatgaag
aaaaacaacatcagtatagcctttaaccaacacatattctctgcagaaggtgttaatttc
atgaccgcccacggctctaaaggtttagaatttgagtatgttttcttattaggatgcagc
aaaaaaatatgggatagcaaaggccgtaactttggtttctcttaccctgatactttattt
aaggaaggtgcatcatctagcgatgctgaacaagaaaataccgaagaatctagaaggttg
ttttacgtagcactaacccgagctaaacattctttatttgtaacctatccaaagcttaac
agcagtggtaaagagcaggaagcttcgcaatttataagtgaaatcattagtacagggcat
tatcaagagcataaacaagctgttaccgaggaagaaatgatagatttttatgctacccaa
tttagcgaagcagaaaaacctcaggtaactttaattgataaaaattatattgatttattg
ctacaaaattacactctatcggtaacgcatttaaacaactacttggcttgcccactaaaa
ttctatttccagaatttgataagagtgccatcaggcaaaagcccggcagcaacttttggg
caggcggtacaccatgcgctaaacagggcatttattaaaatgcatgaaaacaatgaaacc
ttcttagctaccgatgattttatgaatgatttttcttggtggatgaaccgtaacaaagac
tctttcaccagagaagattttaagctgaggatggaatatggctacaaaatattaccagat
tactacgagcaaaatatcagtaaatggaataaagttgtggtaaccgagcgtaaaatcaga
aatgtggagattgaaggtgtgcctattaccggtaatctggataagattgaatttaatggt
aaaatggtaaatgtggttgattataaaactgggaaattcaaaaacgcaaaacctaaattt
aataagccatcagaagaagaaccacatggcggcgattactggcgacaagccgtattttat
cgtattttaattgataacgatagaacaaaagattggcaagtgctaagtaccgagtttgat
tttattgaacctattagcgatggcgaatatcataaagaaaaggtaatgattgttgcagaa
gatgtagaaaccgttaaaaaccaaattaccagcgtttattcaaaaatcttaagctacgag
tttaatacgggctgtggtaaaaaagattgcgagtggtgccattttgtaagaagcaacttt
aaacaaacagacggcatattagaacaaatacaagcagaggatgctgatatttaa
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