Pedobacter sp. KBS0701: FFJ24_002470
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Entry
FFJ24_002470 CDS
T06361
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FFJ24_002470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pek03021
]
FFJ24_002470 (rpoC)
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_002470 (rpoC)
Enzymes [BR:
pek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FFJ24_002470 (rpoC)
Transcription machinery [BR:
pek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FFJ24_002470 (rpoC)
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FFJ24_002470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QDW23747
LinkDB
All DBs
Position
642921..647207
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLSSPEIILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIALVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQSGLMAEEGINYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLKRIDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGA
NTRIENRPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLKLHECGIPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDETRVVK
GQDSNFYSPEEVIIAYNEKELDLHAFIKVRVNVKQADGSIVNKLTETTVGRVLFNQMVPE
EVGYINELLTKKSLRDIIGEVVKMTGMARASQFLDDIKELGFKMAFQGGLSFNLQDVNIP
VEKHTLLEQAAAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTTFVMTQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGDIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNDNDCGTLRGMYTTALKDQEDIVE
PLYDRILGRTSLHDVYNPLDNTLLVGAGEDINEDVAKLIEESPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESNIVAK
FDGVIEFENIRTVDTQTEEGTVQVVLGRSGEFKIVEPGTGRIIVTNNIPYGAFLFVKEGD
KLSKGDKICSWDPYNAVILSEFAGKAQFDAIIEGVTFREESDEQTGHREKVIIDTRDKTK
NPSVQIVDKKGEFIKGYNIPVGAHVSVDEGETIQTGQIIAKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGEVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILSIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VHIEDPGDTIFLENNAVDRWDFADENDAMYDKKVVEDAGDSTDFKPGQIVSLRRLRDENS
QLKRKDLKQITVRDARPATASSILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacatcaatcacgattagctta
tcgtctccggaaattattctggaacgttcaagcggtgaggtgttgaaaccagaaaccatt
aactaccgtacttacaaacctgagcgtgatggtttgttctgtgagcgtatttttggtccg
gtaaaagattacgaatgtcattgcggtaaatacaaacgtatccgttataaaggtattgtt
tgcgatcgttgtggtgttgaagtaacggagaaaaaagtacgtcgtgagcgtatgggacac
attgctttagtggttcctgttgcacacatctggtacttccgctctttaccaaacaaaatc
ggttatttattaggtttacctactaaaaaattagatttaattatctattacgagcgttac
gtagttattcagtcaggtttaatggctgaagaaggtatcaactatatggacttcttaacg
gaagaagaatatttagatatcttagataaattacctaaagaaaaccaatacttagacgat
aaagatcctaataaattcatcgccaaaatgggtgctgaagcattagaagatttattaaaa
cgtattgatttagatactttatcttatgatttacgtcaccaggcagctaacgaaacttct
cagcaacgtaaaaatgaggctttaaaacgtcttcaggttgttgaagctttccgtggagct
aatacgcgtatcgagaatcgccctgagtggatgattgttaaaatcgttccggttattcca
ccagaattacgtccgttagtgccattagaaggtggtcgtttcgccacttccgatttaaat
gatttataccgtcgtgtaattatccgtaacaaccgtttaaaacgtttgatcgagattaaa
gcaccagaggtaattttacgtaacgagaaacgtatgttgcaggaagctgtagattcgtta
ttcgataactcacgtaaagttaacgcggtaaaaactgaaggtaaccgtgctttgaaatca
ctttcagatatcctgaaaggtaaacaaggccgtttccgtcagaatttattgggtaaacgt
gtggattattcagcccgttcggtaattgttgtagggcctagccttaaattacacgaatgc
ggtattcctaaagatatggctgctgagctttacaaaccgttcattattcgtaagatgatt
gagcgtggtgttgtaaaaacagttaagtctgctaagaaaatcgttgatagaaaagatccg
ttagtttgggatatcttagaaaatgtattaaaaggtcacccggtattattaaaccgtgca
ccaacactacacagactaggtattcaggctttccagccaaaattaattgaaggaaaagca
atccagttacacccattagtttgtactgcattcaacgccgattttgatggtgaccagatg
gctgtccacttaccgttaggtaacgcagcaattttggaagcccaggtattaatgttggcc
gcacacaatatcttaaaccctgcaaacggtacaccaattactgtaccttctcaggatatg
gttttgggtctttattatattactaaaggccgtagaacagatgaaaccagagttgtaaaa
ggacaggattcgaatttctattctccggaagaagttattattgcttataacgagaaagaa
ttagacttgcacgcatttatcaaagtaagggtaaatgttaaacaagccgacggttctatc
gttaataaattaactgaaactactgtaggtagagtattgttcaaccagatggttcctgaa
gaagttggttatatcaatgaactattaaccaaaaaatctttaagagatattattggtgaa
gtagtgaaaatgactggtatggcgcgtgcttctcaattcttagatgatatcaaagaatta
ggtttcaaaatggcattccagggaggtttatcgttcaacttacaagacgtaaacattccg
gtagaaaaacatactttattagaacaggcagcagctgaggttgaagaggtaagaaacaac
tataacatgggtttcattaccaacaacgagcgttacaaccagattatcgatatctggacc
cgtatcaacaacaggttaactacattcgttatgactcagttatcgtcagataaccaaggt
tttaactcggtttacatgatgcttgattcaggtgcacgtggatctaaagagcagattcgt
cagctttgcggaatgcgtggtttgatggcgaaacctcagaaatcaggttcaggtggtgat
attatcgaaaacccgatcttatcaaactttaaggaaggtttatctgtattagagtacttt
atctctactcacggtgcacgtaaaggtttggcggatacggcgttaaaaacggctgatgcg
ggttacttaacccgtcgtttacatgatgtggcgcaggatatgattgttaacgataacgat
tgtggtactttaagaggtatgtatacgaccgctttaaaagatcaggaagatatcgttgag
ccattatacgacaggattttaggccgtacttcactacatgatgtgtacaatccattggat
aacactttattggtaggtgctggcgaagatattaacgaagatgttgctaaattgatcgaa
gaatctccactagagggtatcgagatccgttcagtattaacttgcgaatctaaacgtggt
gtttgtgcattatgttatggacgtaacttagcgtctggtaaacgtgttcagagaggtgag
gcagttggtgtaattgcagcacagtctatcggtgagccgggtacacagttaacacttcgt
actttccacgtgggtggtactgcatcaaacattgctgcagaatctaacatcgtagctaag
tttgatggtgtaatcgaattcgaaaatatccgtactgttgatacacaaacagaagaagga
acagttcaggtggtattaggtcgttcaggtgagttcaaaatcgttgaacctggaaccgga
cgtatcattgtaaccaacaacattccttacggtgcattcttgttcgtaaaagaaggtgat
aaactttctaaaggtgataaaatctgttcatgggatccatacaacgcggttattctgtca
gaatttgccggtaaagcacagtttgatgccattattgaaggtgtaaccttccgtgaagaa
tcagatgagcaaactggtcaccgtgaaaaagtaattatcgatacccgtgataaaacgaaa
aacccttcagttcagatcgttgataagaaaggtgaattcattaaaggttataacattccg
gtaggtgcccacgtttcagttgatgaaggtgaaacaatccaaactggacagattatcgct
aagattcctcgtgcaactggtaaaacccgggatattacaggtggtttacctcgtgtaacg
gaattatttgaagcacgtaacccatctaacccagctgtagtaactgagattgatggtgtg
gtaactttaggtggcgttaaacgtggtaaccgtgaaatcactatcgaatcgaaagatggt
gaagttaaaaaatacctggttccattgtcgaaacacatccttgttcaggataacgacttt
gtaaaagcaggtatgcctttatcagatggttcaatctctcctgccgatatcttatcaatt
aaaggccctgcagcggttcaagaatacttagtaaatggtattcaagaggtttaccgttta
caaggtgtgaaaattaacgataagcacttcgaggtaattgttcaccagatgatgcagaaa
gttcacattgaagatccaggtgatactattttcttagaaaacaatgctgttgaccgttgg
gattttgccgatgagaacgatgcaatgtacgacaagaaagttgttgaagacgcaggtgat
tctacagatttcaaaccaggtcagattgtttcattacgtagattaagagacgaaaattct
caattgaaacgtaaagatttaaaacagattacggttagagatgcaagaccagcaactgca
agttctatcttacaaggtattacacgtgcatcattaggtactaaatcgttcatttctgcg
gcttcgttccaggaaactacgaaagtattaaatgaggcagcaattgcaggtaaacgcgat
aatatgttaggcttgaaagaaaacgtgatcgttggtcacttaatcccttcaggtactggt
gtacgtggttacgaaagaatcatcgttggttctcaggaagaatacgataaattattagct
tcgaaacaagaagaagtagaagcttaa
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integrated database retrieval system
