Pedobacter sp. KBS0701: FFJ24_006870
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Entry
FFJ24_006870 CDS
T06361
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pek
Pedobacter sp. KBS0701
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pek03032
]
FFJ24_006870 (topA)
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_006870 (topA)
Enzymes [BR:
pek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FFJ24_006870 (topA)
DNA replication proteins [BR:
pek03032
]
Prokaryotic type
DNA Topoisomerases
FFJ24_006870 (topA)
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FFJ24_006870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
QDW24554
LinkDB
All DBs
Position
complement(1755982..1758546)
Genome browser
AA seq
854 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKGDMAIDIKNNFAQTYEVPADK
KNVVAELKKLAKEAEMVWLASDEDREGEAISWHLFETLGLKVEKTKRIVFHEITKPAILK
AIDSPRGIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EVLNFNAAAAYKITAQFSTGKGKEMVKAELPQRFESEADAEKFLQDCVNAKFDITSLETR
PAKRNPAAPFTTSTLQQEASRKLGFSVARTMQVAQRLYEAGKITYMRTDSVNLSETALNA
AAAEIKSAYGDKYHQHRVYKTKSAGAQEAHEAIRPTYFDRHTVDGDISEKRLYDLIWKRS
IASQMSEALFEKTTAQITASTRKEHLVAEGEVLKFDGFLKVYLESTDDEENEEKEGGAIL
PPLSKGQELFLKEMQATERYSRPPARYTEASLVKKLEELGIGRPSTYAPTISTVQNRGYV
VKEDRDGKQRKFTAFVLAGGQVKKEIKSEITGAEKSKLFPTDIGEVVNDFLVEHFKGIVD
FNFTAKVEKEFDEIAQGLQEWTKMLHSFYNPFHSEVETTLETAERATGERLLGLDPATGK
NVYTKVGKFGPLVQIGELDEEEKPRYASLMRTQSVATITLDEALELFKLPFQLPDFEGKE
VMIGVGRFGPYVKWGESFISLPKNEEPLSVTYERAVEIIKEKMDADAPIAFYEGLGVTKG
KGRFGPFIKWNDLFINIPAKGYDFDNLTQEDINTLIGKKVEKEANRYIKTWDAEKISIEN
GRWGPFIRFGKLMLKLRNNEATKQKYTPEELADIDLETVKKMIVEQVPNAFETKKKAPAK
KKAAPAKKAVAKKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaatttattaatcgtcgagtcacccgcaaaagctaaaactatagaaggctat
ttaggcaaagatttccttgtgaaatctagctatggccacatccgtgatttagttaaaggc
gatatggcgattgatattaagaacaattttgcccaaacctacgaggttcccgccgacaag
aaaaatgttgtcgccgaattaaaaaaactagctaaagaggccgaaatggtatggctggca
tccgatgaggaccgcgagggagaagccatctcctggcacttatttgaaactttaggcctg
aaagtagagaaaacaaaacgtattgtatttcatgaaattaccaaacctgcaattctaaaa
gcaatcgatagtccccgtgggattgattataatctggtaaatgctcaacaggctcgccgt
gtattggatcgtttggtgggttttgaactttctcctgtattatggaaaaaagtaaaacca
tccctttctgcaggccgtgtacaatccgtggccgtacgtttaattgtggatagagaacgc
gaagttttaaactttaatgcagccgctgcttataaaattactgcacagttttctaccgga
aaaggaaaagaaatggtgaaggcagaattgccacaacgttttgaaagtgaagcggatgcc
gaaaaatttcttcaggattgtgtaaatgctaaattcgatatcacgagtttagaaacccgt
ccggcaaagcgcaatccggccgccccttttaccacttctaccctgcaacaggaagcttcc
agaaaattaggtttttcggttgcgagaaccatgcaggttgcgcagagattgtacgaagcg
ggtaagattacttacatgagaacagactctgtaaatttatcagaaaccgcattaaatgct
gctgctgccgagattaaatctgcttatggagataaataccaccaacaccgcgtttataaa
accaaatcggctggtgcgcaagaagctcacgaagccatccgcccgacatatttcgacaga
cataccgtagatggagatatttcagaaaaacgtttatacgatttgatctggaaacgttcc
attgcttcgcaaatgagtgaagctttgtttgaaaagacaaccgcacagattaccgcttca
accagaaaagaacatttagtggcagaaggtgaagtattaaagttcgatggtttcttaaaa
gtttacctggaatctacggatgatgaagaaaacgaagaaaaagaaggtggtgcaatttta
cctcctttaagtaaggggcaggaattatttttaaaagaaatgcaggccacggagcgttat
tcgcgcccgccagccagatatacagaagccagtttggttaaaaaactggaagaactgggc
attggtcgcccgtctacttatgcaccaactatttctaccgtacaaaaccgtggttatgtg
gttaaagaagatagagacggcaaacaacgaaagtttactgcttttgttttagctggtgga
caggtaaaaaaagaaattaaatcggaaattaccggtgcagaaaaatcgaaacttttccct
actgatataggtgaagtagtaaacgatttcttagtagaacattttaaaggtattgtagat
tttaactttacggccaaagtagaaaaggaatttgacgaaattgcgcaaggtttacaagag
tggaccaaaatgctgcattctttttataatcctttccatagcgaagtagaaaccacttta
gaaactgccgaacgtgctacaggtgagcgtttattgggattagatccggcaactggtaaa
aatgtatatactaaggttggtaaatttggcccattggttcagattggagaattggatgaa
gaggaaaaaccccggtatgccagcttaatgcgcacacaatctgttgcaaccattacttta
gatgaagcgcttgaactatttaaacttcctttccagcttcctgattttgaaggtaaggaa
gtaatgattggggttggccgttttggtccttatgtaaagtggggcgaaagttttatttct
cttcctaaaaacgaagagccgctatcggtaacttacgaaagagcagttgaaattatcaaa
gagaaaatggatgctgatgcgccgattgctttttacgaaggtttaggggtaacaaaagga
aaaggccgttttggtccgtttatcaaatggaacgatctttttatcaatattccggcaaaa
ggatacgatttcgacaatttaacacaagaagatattaataccttaatcggcaaaaaagta
gaaaaagaagccaacaggtacattaaaacctgggatgctgaaaaaatctctattgagaat
ggccgttggggaccgtttatccgttttggcaaactgatgctcaaattaaggaataacgag
gcgaccaagcagaaatatacaccggaagaactggcagacattgatttggaaacggtgaag
aaaatgatcgtggaacaggtgcctaatgcttttgaaacgaagaaaaaagcacccgcaaag
aaaaaagcagcgccggcaaaaaaggctgtagcgaagaagaaataa
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