Pedobacter sp. KBS0701: FFJ24_007225
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Entry
FFJ24_007225 CDS
T06361
Name
(GenBank) AAA family ATPase
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pek
Pedobacter sp. KBS0701
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pek03009
]
FFJ24_007225
03012 Translation factors [BR:
pek03012
]
FFJ24_007225
Enzymes [BR:
pek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
FFJ24_007225
5.6.2.5 RNA 5'-3' helicase
FFJ24_007225
Ribosome biogenesis [BR:
pek03009
]
Eukaryotic type
Other ribosome biogenesis factors
FFJ24_007225
Translation factors [BR:
pek03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
FFJ24_007225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
ResIII
Helicase_RecD
AAA_22
UvrD-helicase
SLFN-g3_helicase
PhoH
DEAD
UvrD_C_2
AAA_16
Herpes_ori_bp
ATPase_2
PIF1
T2SSE
nSTAND3
AAA
AAA_24
cobW
AGO_N
UvrD_C
AAA_7
NPHP3_N
HEM4
SNF2-rel_dom
SMUBP-2_HCS1_1B
AAA_25
Flavi_DEAD
Pannexin_like
Mg_chelatase
HMG_box
Motif
Other DBs
NCBI-ProteinID:
QDW24618
LinkDB
All DBs
Position
1834511..1836424
Genome browser
AA seq
637 aa
AA seq
DB search
MPKEYFKKLQDLLDTERNEDLQSYLKLTENTSAADRRALGLTWYPIAIRNTEIGRGDYLT
IELERTTHQDFSHQFRFGAAVVLFSNHDAKEDRVEGIINHQSGNRMKISLRVDELPDWTR
DGKLGVDLLFDNNSYDEMQNALKQATHLAENESENKLIHILTKGEKPSFQGEEKFIIPNT
LNDSQQLAVNKIIAADHLAVVHGPPGTGKTTTLVHAIKSLVKHSDQKILVVAPSNTAVDL
LTEKLAAEGLKVIRVGNPARVSERLLAATLDHQMADHPEMKTIKVLKKQASEYKNMAHKY
KRSFGKAERDQRKALFDEAHKIGKEVEKTEQYIMDNLFTKAQIITATLVGANHYTVRNLK
YNTIVIDEAGQALEPACWIPILKAQKVILAGDHFQLSPTIKSNEAARNGLGTTLLEKAVN
LHPESVVLLNEQYRMNKDIMGYSSRVFYKNALKAHQSVADNLLFTGDEPIQFIDTAGCSY
DEKLDGTSTTNPDEAAFLVKHLTHLVAGLMDQTSTESFPSIAIVSPYKQQVQILNALVQE
NEILIPYRNKISVNTIDSFQGQERDVVYISLTRSNSDGSIGFLSDTRRMNVAMTRARKKL
VVIGDSATLSKSNFYAEFIHYAEQLNAYHSAWEFIDL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaaagaatatttcaaaaaactccaggatctgctagataccgaacgcaacgaagat
ttacaatcgtacctaaaacttactgaaaatacttcggctgctgataggagagccctgggt
ttaacctggtaccctattgcaatcaggaatacagaaataggccggggtgattatttaacc
attgagctggaaagaactacccatcaggatttttcccatcagttccgttttggcgctgct
gtggtattattttctaatcacgatgccaaagaagaccgggtagaggggattatcaatcat
caaagtggcaacaggatgaaaatcagcttgcgtgtggatgaactgccagactggaccaga
gatggcaaactcggcgttgatttactttttgataataatagttatgatgaaatgcagaat
gcccttaaacaggctacgcatttggcagagaatgaatcggaaaataaactgatccatatt
ttaacgaaaggagaaaaaccttcatttcagggagaagagaaatttatcattcccaataca
ctaaacgactcgcagcaattagccgtgaataaaattattgcagccgatcatctggctgtg
gttcatggtccgccaggcaccggaaaaacaacaacactagtacatgctataaaatcgttg
gttaaacacagtgatcaaaaaattctggtggtggcaccaagtaatactgcggttgattta
cttacggagaagttagctgctgaagggttaaaagtaatccgtgtgggtaacccggcaagg
gtttcggaaagattgcttgcggctacgctcgatcatcaaatggccgatcatccggagatg
aaaaccattaaagttttaaaaaaacaggccagtgagtataaaaatatggcccacaaatat
aaacgtagttttggcaaagcagaacgcgaccaacgcaaggccttgtttgatgaagcacac
aaaattggaaaagaagtagaaaaaaccgaacagtatattatggataatctgtttaccaaa
gcacagattattactgctacactggtaggggctaaccattataccgttcggaatttaaaa
tataatacgattgtgattgatgaggcgggacaggccttagaaccagcctgctggataccg
attttaaaggcgcagaaagtaatcttggccggggatcatttccagctttcgccaaccata
aaatcaaatgaggcagccagaaatggtttaggtaccactttattagaaaaagctgtaaat
cttcatccagaatcggttgtgttgttaaatgaacaatacaggatgaacaaagatattatg
ggttattcgtccagggtattttacaaaaatgcattaaaagcccatcagtctgttgccgat
aatttattatttaccggtgatgaaccgatccagtttatcgatacggcaggttgtagttac
gacgaaaaattagacggaaccagcacaaccaaccctgatgaagctgcgtttttggttaaa
catcttacgcatctggttgctggtttgatggatcaaacctcaactgaaagctttccatct
attgctattgtttctccatataaacaacaggttcagattttaaatgccctggttcaggaa
aatgaaattttaattccatatcgaaataaaatttcggtaaatacaatagatagtttccag
gggcaggaacgtgatgtggtttatatcagcctgaccagaagtaatagcgatggaagtata
gggtttttatcagatacgaggcgaatgaacgtggccatgacgagggccaggaaaaagctg
gttgtgattggggatagcgctacattatcgaaatctaatttttatgcagaatttattcac
tatgcagaacaattgaatgcctaccacagtgcctgggagtttatagacctgtaa
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