Pedobacter sp. KBS0701: FFJ24_007365
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Entry
FFJ24_007365 CDS
T06361
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFJ24_007365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pek03019
]
FFJ24_007365
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_007365
Enzymes [BR:
pek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFJ24_007365
Messenger RNA biogenesis [BR:
pek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFJ24_007365
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FFJ24_007365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF5805
HTH_41
RAD51D_N
Cas3-like_C_2
TFIIE_alpha
Motif
Other DBs
NCBI-ProteinID:
QDW24643
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All DBs
Position
1869684..1871576
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AA seq
630 aa
AA seq
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MTAIEILQKYWGHQAFRPLQEDIIASVLEGNDSLALLPTGGGKSICFQVPALVKDGICIV
VSPLIALMKDQVENLKSKGIEAIAIYAGMGKREIDILLDNCIYGKIKFLYLSPERLLSDL
VRVRISYMNVNLIAVDEAHCISQWGYDFRPPYQQIAKLREILPNVPVLALTATATDFVRK
DIIEKLEMKDPQVYVKSFARDNLSYVVFGNEDKYKKLIDICQNVKGTGLVYVRNRRETAE
VANFINRNGIKADFYHAGLERDVRFLKQEEWKNNKTRIMVATNAFGMGIDKADVRFVVHL
DLPESLEAYYQEAGRAGRDEKRSYAVLLANQSDILGLESRYLDSFPSPDEIRKTYHYLGN
YFQLAFGAGEGLTFTFDIADFCKRFNISVLKTISALKFLEHDGYLTLSESVFLPSRIMFI
ASHEDIYRFQIENKSYDGIIKTILRSHGGAFDGFVKINEADLAKRTGLSYKEIITLLNKL
QSIELLTYIQQTDQPQLQYVRPRVDMDHFDLDVKYLELRKEILHKQINAVVAYASSNLCR
SVQLLDYFDEHHATKCGVCDVCLAEKRAESQNQMGEEIEFEVVSLLQQQPLSLDDLVTNI
KNGAESERIDAIRELLDAGKIKTDGKKYYL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaatagagattttacaaaaatattggggacaccaggcttttagacctttacag
gaagatattattgcttctgttctggaaggaaacgacagtttagcactattgcctacgggt
gggggaaaatcgatctgttttcaggttccggccttggttaaagatgggatttgtatagtg
gtttcgccgctaattgcgctgatgaaggatcaggtagaaaacctgaaatcaaaagggatt
gaagccattgccatttatgccgggatggggaaacgggaaatcgatatcttgctggataac
tgtatttacggaaaaattaaatttctttatttatctccagagcgtttattgtcagatttg
gtgcgggttcgtatttcctatatgaatgtgaacctgattgccgtagatgaagcgcattgt
atttctcaatggggttacgatttccgtccaccttaccaacagattgccaaactccgagaa
attcttcccaatgttccggtgctggcacttacggccacagcaacagattttgtaaggaag
gatattatcgagaaactggaaatgaaagacccgcaggtttatgttaaaagtttcgccagg
gacaatttaagttatgtggtttttgggaatgaagacaaatacaaaaaactgatcgatatt
tgccagaatgtaaaaggaacaggcctggtttacgttcgtaaccgcagggaaactgctgaa
gtagccaattttattaaccgaaatggtattaaagcggatttttatcatgccggattggaa
cgagatgttcgtttcctgaaacaggaagagtggaaaaacaataaaacccgtatcatggtg
gctaccaatgcttttggaatgggaatcgataaagccgacgtccgttttgtggtgcattta
gatctgcccgaaagtctggaagcttattaccaggaagcaggcagggcaggacgcgatgaa
aaaagaagttatgcggtcctattggccaatcaatctgatatccttggcttagaatcccgg
tatttagatagctttccttcaccggatgaaatcagaaaaacctatcactacctgggcaat
tactttcaattggcctttggtgccggtgaaggtttaacctttacttttgatatcgctgat
ttctgtaaacggtttaatattagtgttttaaaaaccatttctgcgttgaaatttttagag
catgatggttatcttacgttatctgaaagtgtttttttaccttcaaggataatgttcatc
gccagtcatgaggatatttatcgttttcagatcgaaaataagtcttacgatggcattatc
aaaactattctgcgctcgcacggcggcgcttttgatggttttgtgaaaatcaatgaagcc
gatttagccaaaagaacgggtttatcttataaggaaatcattactttactcaataaactt
caaagcattgaattgcttacctatatccagcaaaccgatcaaccacaactgcaatatgtt
cggccacgggttgatatggatcattttgatctggatgtgaaatatttggaactgagaaaa
gagattttacataaacagattaacgcggtggtggcttatgcttcatctaatttgtgcagg
agtgttcaattgctggactattttgatgagcatcatgctacaaaatgtggggtatgcgat
gtttgtctggctgaaaaaagagccgagagccaaaatcaaatgggagaggaaatcgagttc
gaggttgtctctttattacaacaacagcctttaagtcttgatgatcttgttaccaacatt
aaaaatggcgctgaatcagaaagaattgatgccattcgagaattattagatgctggtaag
attaaaactgatgggaagaaatattatctttag
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