Pedobacter sp. KBS0701: FFJ24_009860
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Entry
FFJ24_009860 CDS
T06361
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FFJ24_009860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_009860
Enzymes [BR:
pek01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
FFJ24_009860
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
FFJ24_009860
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FFJ24_009860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Ribosomal_S13
NFACT_N
KH_PARP14_2
Motif
Other DBs
NCBI-ProteinID:
QDW25096
LinkDB
All DBs
Position
complement(2496467..2497234)
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AA seq
255 aa
AA seq
DB search
MAELPDLEVFARILTRRYRGKVLEKIDIPVDKKLNVPPKKLKENLEGHKLSLVKRSGKTL
QFHIGDSILGMHLMLRGELVELTDKAPKFTIMSFHFKGGSGFAVTDMQKQATPTLHPQEN
DVPDALEVDYPALLKLLEGKRTVIKSLLMDQKKIRGIGNSYGDEILYHAGISPFSIAGKI
PGDDVNRLHKSMHSVLETAIKKIGKENGDELRGELRDFMEIHGAGIKQTKKGEEVLHEKI
GGRTSYYTKSQKLFD
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atggctgaactacctgatcttgaagttttcgcgcgcatcctcacccgaagatatagaggc
aaagtgcttgaaaaaattgatattccggttgataaaaaacttaatgtccctccaaaaaaa
ctgaaagaaaatcttgagggccataaactttctttggtaaaacgctcagggaaaacttta
cagttccatatcggagacagcatactcggaatgcacctgatgctcaggggagaacttgtt
gagctaactgataaagcacctaaatttaccattatgagctttcattttaaaggtggatcc
ggttttgccgtgacggatatgcagaaacaggctaccccgacgcttcatccgcaggagaac
gatgttcccgatgcccttgaggttgactatccagcactgctcaaactgttggaaggaaaa
agaactgtgatcaaatccctgctgatggaccagaagaagatccgggggatcggaaattct
tatggtgatgaaatactctaccatgccgggatttcccctttttccattgccggcaagata
ccaggggacgatgttaatagactgcataaaagtatgcactcggtgctggaaactgccata
aagaaaatcgggaaagaaaacggtgatgagttgcgtggtgaactcagggactttatggaa
atacatggagcgggtatcaaacagaccaaaaaaggcgaggaagtgcttcatgaaaaaata
ggtggcagaacaagttattatacaaaatcccaaaaactttttgactga
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