Pedobacter sp. KBS0701: FFJ24_011555
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Entry
FFJ24_011555 CDS
T06361
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFJ24_011555 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pek03019
]
FFJ24_011555 (rnr)
03016 Transfer RNA biogenesis [BR:
pek03016
]
FFJ24_011555 (rnr)
Enzymes [BR:
pek01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FFJ24_011555 (rnr)
Messenger RNA biogenesis [BR:
pek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FFJ24_011555 (rnr)
Transfer RNA biogenesis [BR:
pek03016
]
Prokaryotic type
tRNA degradation factors
FFJ24_011555 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
TcfC
MRP-S35
Motif
Other DBs
NCBI-ProteinID:
QDW25412
LinkDB
All DBs
Position
2869429..2871561
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AA seq
710 aa
AA seq
DB search
MAKKKSANIKLVLNQLVSDVFEKNNNQLLNYKQVSAKLNLNDQESRETILEILKEGKSAG
IFLEPEKGKFKLKELQNFIIGTVDMTADGSAYIVPEDEFEKDIFVAPRKLKNALHGDTVK
AYVFAKKSGRKNDGEVIEIIKRAKSDFTGVIKISDRFAFVIADDKKMMHDIFVPLADTHE
AKNGQRVLVTLSDWPESAKNPIGIVKHVLGNQGENNTEMNAILAQYGFPLEFPPQVEREA
NAIPEEISAAEIAKRKDFRKVLTFTIDPADAKDFDDAISYQKLPNGNYEIGVHIADVSHY
VIQGTELDKEAYSRATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEQANI
QNEWYGRTVVHSDRRFSYEEAQEVIESKSGDYATEIQKLNELAYILRDRKFKNGAISFES
TEVKFKLDDSGKPIGVYVKERKDAHKLIEDYMLLANRKVAEFIAKKTKGKDKLTFVYRVH
DSPNMETLNTFATFASRFGYKINTKSDKEIAKSLNNLMADVEGKKEQNILTSLAIRSMAK
AIYSTKKTSHYGLAFEYYTHFTSPIRRYPDVMAHRLLQTYLDGGKSADMEFYEVACVHSS
AMEKRAADAERASIKYKQAEYLENNIGTEYKGIISGVTEWGMYVEIEENKCEGMIRLRDI
SDDFYVLDEKNYCIVGQRKKKKYQLGDEVMIRVKKVDLSKRQIDFTLIPD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaaatcggcaaatataaaattggttctgaatcaattggttagtgatgtt
tttgaaaaaaacaataatcagctgcttaattacaagcaggtttcggccaaattaaatttg
aacgatcaggaatcaagagaaaccattcttgagatcttaaaagaagggaaaagtgcagga
attttcttagaaccagaaaaaggtaaatttaaactaaaagaactgcagaactttattatc
ggtacggttgatatgactgccgatggatcagcatacatcgttccggaagatgaattcgag
aaggatatttttgtagctccccgaaaacttaaaaatgctttacacggcgataccgtgaag
gcttatgttttcgcgaagaaaagcggtcgtaaaaacgatggcgaagttatcgaaatcatt
aagagggcaaaatcagatttcacaggagtaatcaaaatatcagatcgctttgcattcgta
attgccgacgataaaaaaatgatgcacgatatttttgtgccattggccgatacacacgaa
gccaaaaatggtcagcgcgtattggtaaccctatccgattggcctgaaagtgccaaaaat
ccgattggtattgttaagcatgtcctgggtaaccagggcgagaacaataccgaaatgaat
gccattttagcgcaatatggctttcctttggagtttcctcctcaggtagaacgcgaagca
aatgcgatccctgaagaaatttcggctgccgaaattgccaaacgtaaagattttagaaag
gtgttaacttttaccatcgatccggcagatgccaaagattttgatgatgccatttcatac
cagaaattacccaatggaaattatgaaatcggtgtacacattgccgatgtttcgcattat
gtaatccagggaacagaattagacaaagaagcttacagtcgtgctacttcagtttatctg
gtcgatcgcgtaatcccgatgttgcctgaacgtttaagtaatggcgtttgttcattgcgt
ccaaatgaagataagttgtgttttgctgctgtttttgaactggatgagcaagccaatatc
caaaatgaatggtatggtcgtacagtagtccactcggatcggagattcagttatgaagaa
gcccaggaagtaattgaaagtaaaagcggcgattatgcaactgaaatacaaaaactgaat
gagctggcctatatccttcgcgaccgtaaatttaaaaatggtgccattagctttgaaagc
accgaagttaaatttaagcttgatgattcgggcaaaccaattggtgtttatgtaaaagag
cgtaaagatgcccataaactgattgaagattacatgcttctggccaaccgtaaagttgcc
gaatttatcgcgaagaaaactaaaggaaaagataaactgacctttgtttatcgagtgcac
gattcgccaaatatggaaaccttgaatactttcgccacatttgcttcgcgcttcggttat
aaaatcaacaccaaatcggataaggaaattgccaaatcattaaacaatttaatggccgat
gttgagggcaaaaaagaacaaaatatactcacatcactcgccatcaggtcaatggcaaaa
gcaatttattcaactaaaaaaaccagtcattacggcctggctttcgaatattacacccac
tttacttcccctatccgccgttatccggacgtaatggcacataggcttttacaaacttat
ttagacggtggaaaatcggccgacatggagttttacgaagtagcctgcgtacattcttcg
gctatggagaagagagccgccgatgcggaacgagcctctattaaatataaacaagccgaa
tacttagaaaacaatatcggtacggagtacaaagggattatttcaggcgttaccgaatgg
ggcatgtatgtagaaattgaagagaataaatgtgaaggtatgattcgtttaagggatata
tcagatgatttttatgtacttgatgagaaaaactactgcattgtaggccaacgcaaaaag
aaaaaataccaacttggagatgaagtgatgatcagggtaaaaaaagttgatctctctaaa
cgtcaaatcgatttcaccctgattcctgactaa
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