Pedobacter sp. KBS0701: FFJ24_012950
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Entry
FFJ24_012950 CDS
T06361
Name
(GenBank) bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek00300
Lysine biosynthesis
pek00470
D-Amino acid metabolism
pek00550
Peptidoglycan biosynthesis
pek01100
Metabolic pathways
pek01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
FFJ24_012950
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
FFJ24_012950
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
FFJ24_012950
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
FFJ24_012950
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pek01011
]
FFJ24_012950
Enzymes [BR:
pek01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
FFJ24_012950
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
FFJ24_012950
Peptidoglycan biosynthesis and degradation proteins [BR:
pek01011
]
Precursor biosynthesis
Amino acid ligase
FFJ24_012950
Racemase
FFJ24_012950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QDW25677
LinkDB
All DBs
Position
complement(3214713..3217172)
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AA seq
819 aa
AA seq
DB search
MQNPIYTVAKIAEILNADTKLVDGEVVIQYLVIDSRSVLVPENSIFFALSSHRDGHEFIK
DAYSKDIRNFVITEAKYVNQYPDCNFLLVDDALTALQQLTIYHRNQFQFKTIGITGSNGK
TIVKEWLYQLLAADFNIVKSPKSYNSQIGVPLSVWQIEADHTLGIFEAGISAVNEMQRLA
EIIQPKIGILTNIGEAHAEGFSSKKEKLTEKLKLFKDSDLFIYAPEYVTEVSPKDLPGKK
KFSWSSKQVADLQITTVEPIEGNCYLRAIYQNAEIECMLPFKDKASIENGMICWATLLAL
GYTPEQADLRLEKLSHVSMRLELKNGINQCSIIDDSYSADISSLAIALDFLNQQNQHPKK
TVILSELFETGRDDLDLYTEIAELLAQKKVNRLIGIGTHISRYADLFKFETQFFENTNAF
VEAFPGLQFSHETILVKGARRFEFGRISKLLTQKIHDTVLEIDLNAMVGNLQFYRSKIKP
GVKIMAMVKAFSYGSGSFEIANLLQFHKVDYLAVAYADEGIALRKAGITLPIMVMSPEES
AFEAIVKHKLEPEIYSIEILNSFLNALSDYDFDYPIHIKIDSGMHRLGFDQAEMDALSGL
LKDSAKVKVQSIFSHLVASDAAEHDGFTRQQIDKFKIIANQLVNALGYNPLLHISNTSGI
SRWPDAQMDMVRLGIGLYGFDSALANNRGLQTVMVLKTTVTQVKTLAPGETVGYSRKGVM
PNGGKIATVKIGYADGYTRYFGNGVGKMLVNGHLVPVIGSICMDMTMLDVTSIDVKPGDE
AIVFNKEHTIMQLAKDINTIPYEILTNISQRVKRVYFYE
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacccaatatatactgttgccaaaatagccgaaattttaaatgctgataccaaa
ttagttgatggagaggttgttattcaatacctggtaattgatagccgttcggttttggtg
ccagaaaattctatattttttgctttgtcttcgcaccgggatggacacgaatttataaaa
gatgcttacagcaaggacatccgtaatttcgtgattaccgaagctaaatatgttaatcaa
tacccggattgtaattttttactggttgatgacgctttgaccgccttacaacaactcact
atttaccatagaaaccagtttcagtttaaaaccataggtattacaggaagtaatggaaaa
accattgtaaaagagtggttgtatcagcttttggccgccgatttcaatatcgttaaaagt
cctaaaagttataactcgcaaattggcgtaccgctttccgtttggcagattgaagccgat
cataccttagggattttcgaagccgggatttctgcagtaaatgaaatgcagcgcctggcg
gagattattcagccaaaaattgggattttaaccaatattggcgaagcacatgcggaagga
tttagctctaaaaaagaaaaactcacagagaagctgaaactttttaaagattcagattta
ttcatctatgctcccgaatatgtaactgaggtaagtccaaaagatttacccgggaagaaa
aagtttagctggagcagcaagcaggttgcagacttgcagattactaccgttgaacccatt
gaaggaaattgttatttaagagctatttatcagaatgccgaaatagaatgcatgttgcct
tttaaagataaagcctcgatagaaaatggcatgatctgctgggcaactttactggcttta
ggttatacgccagagcaggccgatctgcgtttggagaaactgagccatgtaagcatgcgc
ctggaactgaaaaacggcatcaatcagtgctccattattgatgattcgtacagtgctgat
atttcttccttggctatagcgctggattttttaaatcaacagaaccaacacccgaagaaa
accgttatcctttccgaattattcgaaaccgggagagacgatcttgatttatataccgaa
attgctgaattgcttgctcaaaagaaagtcaacaggttaattggtattggaacgcacatt
tcgcgttatgccgatctttttaagttcgaaacccagttttttgagaataccaatgctttt
gtagaggcctttccaggtttacaatttagccacgaaactatattggtaaaaggcgccagg
cgctttgaatttgggcgcatcagtaaattgcttacccaaaaaatacacgatacggttttg
gaaatcgacctgaatgcgatggttggcaacctgcagttttaccgttctaaaatcaagccc
ggtgttaaaattatggccatggttaaagccttttcgtatggaagcggaagtttcgaaatc
gccaatttattgcagttccataaggtagattatctggcggtagcttatgccgatgaaggc
attgctttacggaaagccggaattacgctacctattatggtgatgagtcccgaagaatct
gctttcgaagccatcgttaaacataaactcgaacccgaaatttatagtatagaaatcctg
aacagctttttaaacgcactatcggattatgatttcgattacccgatccacattaaaata
gacagtggcatgcaccgtttaggtttcgatcaagctgaaatggatgccttatcgggtctg
ttaaaagattcggcaaaggtaaaagtgcagagtattttttctcatttagtagctagcgat
gctgcagagcatgatggatttacccggcagcagatcgataaatttaaaattattgccaat
cagttagttaacgctttaggttataatccattattgcatatttccaatacttctggtatc
tcacgttggccagatgcgcaaatggatatggtccgtttgggcataggtttgtatggtttt
gattctgctttggccaataaccggggtttacagaccgtaatggtacttaaaactacggtt
actcaagtgaagacattagcgccaggcgaaactgtggggtacagcagaaaaggagtaatg
ccaaatggcggaaaaatagcaacagtaaaaattggttatgcagatggctataccaggtat
tttggcaacggtgtagggaaaatgctggttaatggccatttagtgccggtaataggctca
atatgcatggacatgacgatgttggatgttacaagtatcgacgtaaaacctggtgatgaa
gccattgttttcaacaaagaacacaccattatgcaattggcaaaagatattaataccatt
ccgtatgaaatcctaaccaacatctcgcagagggttaaaagggtttatttctacgagtaa
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