Pedobacter sp. KBS0701: FFJ24_016860
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Entry
FFJ24_016860 CDS
T06361
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFJ24_016860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pek03019
]
FFJ24_016860
Enzymes [BR:
pek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFJ24_016860
Messenger RNA biogenesis [BR:
pek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFJ24_016860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
UvrD-helicase
ssDNA-exonuc_C
Cas3-like_C_2
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QDW26394
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All DBs
Position
4194193..4195494
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AA seq
433 aa
AA seq
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MLFKELNLIEPILKALETEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPML
QLLHEKHINTKATKNIKALVLTPTRELAIQIEESFKAYGRHLNLRHLVIFGGVNQHSQVE
ALRKGVDILVATPGRLLDLMNQGFISLNTIELFVLDEADRMLDMGFIHDVKKVVAKLPAK
RQTLFFSATMPDEIQKLANTILSSPTKVEVTPISSTAETIVQSVYFVDKPDKKKLLIHLL
EDKKIETALVFTRTKHGADRIVKDLAHAGIKAAAIHGNKSQNARQRALTDFKDRKIRVLV
ATDIAARGIDIDQLSHVFNFELPNIPESYVHRIGRTGRAGANGIAISFCDAEENEYLLDI
QKLIKITLPVVDDHPYPLSWESMLAKNQVKRKPQAQSKGGGGAKKSGDGNMSGKPRNASN
NRRFGGNRKRGDR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgttattcaaagaattaaacctcattgagcccattttaaaggcccttgagaccgaaggt
tatacacaaccaacaccaatacaggagcaatccattccaacaatattaaaaggcaaagat
ttattaggttgcgcacaaacaggtaccggaaaaactgctgcctttgctattccgatgttg
cagttattgcacgaaaaacacatcaacaccaaagcaactaaaaacataaaggctttagtt
ttaacgcctacacgcgagcttgccattcagattgaagaaagctttaaagcttatggccgc
cacttaaacttacgtcatctggtaatttttgggggtgtaaaccaacactcgcaggtcgaa
gccctaagaaaaggcgttgatattttagtggcaacacctggccgtttattagacttaatg
aaccagggattcattagcttaaataccattgaacttttcgtactggatgaggctgatcgg
atgctcgatatgggctttattcacgatgtgaaaaaagtagtagctaaattaccagctaaa
cgtcagactttatttttctcggcaaccatgccagatgaaatccagaagttggcgaatacg
attttatctagtccgacaaaagtagaggtcacccctatttcttctactgccgaaacaatt
gttcagtcggtgtattttgtagacaaacctgataaaaagaaattattgatccatcttctt
gaagataaaaagatcgaaactgctttggtttttacccgtaccaaacatggtgcagaccgt
attgttaaggatttggctcatgctggtattaaagctgctgctatccacggtaataaatcg
caaaatgcccgtcaaagggcattaactgattttaaagatagaaaaatccgtgttttggta
gcgactgatattgctgcacgtggtattgatattgatcagttatcacatgttttcaatttt
gagttaccaaacattcctgaatcttacgttcacagaattggccgtaccggtcgtgctggt
gcaaacggtattgcgatttctttctgtgatgcagaggaaaacgaatacttattggatatc
cagaaactgatcaaaattacgttgccagtagttgacgaccacccttacccgttaagctgg
gaaagtatgttagccaaaaatcaggttaaacgcaaaccacaagcccaatctaaaggcggc
ggcggtgctaaaaaaagtggtgatggcaatatgagtggtaagccacgtaatgccagcaac
aacaggagatttggtggaaacagaaaaagaggagatagatag
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