Pedobacter sp. KBS0701: FFJ24_017370
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Entry
FFJ24_017370 CDS
T06361
Name
(GenBank) DUF853 family protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
pek
Pedobacter sp. KBS0701
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_017370
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
FFJ24_017370
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HerA_C
DUF87
AAA_22
TrwB_AAD_bind
ResIII
AAA
AAA_16
FtsK_SpoIIIE
AAA_10
AAA_30
PHA01746
Isochorismatase
CbiA
Zeta_toxin
nSTAND3
T2SSE
AAA_6
AAA_19
AAA_7
AAA_5
AAA_18
Motif
Other DBs
NCBI-ProteinID:
QDW26493
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Position
4319656..4321230
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AA seq
524 aa
AA seq
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MSDLSSKFIEKIKASYAPSGSYIYLGAGILDGQVYSEAEVNLSLKMMNRHGLIAGATGTG
KTRTLQLLAEQLSDAGVPVFMLDVKGDLSGLNQPGSVNPKIEERANQLNKAFSPTGFPVE
IYSLSGKTGSQMRATVLEFGPTLLSKILDLNDTQAGVMAVIFKYADDNKMPVIDLNDLKK
LVSYLSEGAGAAEIKSSYGSISTATSGTMLRKIVAIEQQGLGGMFGEKSFDIEDLFERVD
GKGTISLLNIADVQNQPVLYSTFLLSLLAELFNTMPEVGDLDKPKLVFFFDEAHLLFKNS
SQAFLEQIETIIRLIRSKGIGVFFCTQAPGDVPESVLGQLGNRVQHALRAFTPNDVDALK
KTVNTYPKSDFYEIDKILTSLGTGQALVTVLNEKGIPTEVSATMLTPPRAVMGPLTAADF
DQVVHASPMYTKYKDAIDPESAYEILTRRINDQTAAVEQQKEEAEAQKKAEQESKPKPGE
KSLVEQVMGATITRQIGKEIVRGIFGMLTGKKTRSKTGGGLFGF
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatctttcttcaaaattcatcgaaaaaataaaggcatcctatgctccttcgggt
tcgtatatttatttaggcgccggaattttagacggacaggtttacagtgaagctgaagtt
aatttatcattaaaaatgatgaatagacatggtttaattgccggggcaaccggaactggt
aaaacgcgcacattacaattgttagcagaacaactgtcggatgccggagttcccgttttt
atgctggatgttaaaggcgatttatcaggattgaaccagcccggatcagttaaccctaaa
attgaggaaagggcgaaccaactcaataaagcattctcgccaaccggtttccctgttgag
atttattccctctcgggcaaaacaggttcgcagatgcgcgcaacagtccttgagtttggc
cctacacttttatcaaaaatcttagatttaaacgatacacaggcaggtgtgatggcggtt
atttttaaatatgccgacgataataaaatgccggttattgatttaaatgatttaaagaaa
ctggtttcttatctctcggaaggtgctggtgctgccgaaattaaaagcagttatggcagt
atttcaacagctacatcgggtaccatgcttaggaaaatcgttgccattgaacagcaggga
ttaggcggtatgtttggtgaaaaatcatttgatattgaagatcttttcgagcgggttgat
ggcaaaggcaccatcagcctactaaacattgccgatgttcagaaccagcctgtattatat
tcaacatttttactcagcctgttggctgagttatttaatactatgccagaggttggcgat
ttagataagccaaaacttgtattcttttttgatgaagcacatttactgttcaaaaactca
tctcaagcatttttagaacagatagaaaccattatcaggttaatccgctcgaaaggaatt
ggtgttttcttttgtactcaggcccctggcgatgttcctgaaagtgttttgggccagttg
ggtaaccgtgtgcagcatgcgttaagagcatttacacctaacgatgtagatgcattaaaa
aagacggtgaatacttatccaaaatcagacttttacgagattgataaaatattgacctca
ttgggaaccggacaggctttggttactgttttaaatgaaaaaggtattccaactgaagtt
tctgcaaccatgcttactccgccaagggccgttatgggaccgttaactgctgcagatttt
gatcaggtggttcacgccagtccgatgtataccaaatataaagacgcaattgacccggaa
agtgcctacgaaattttaaccagacgcattaacgaccagactgctgctgtagaacaacaa
aaagaagaagccgaagcccaaaaaaaggccgagcaggaaagcaaacctaaacctggcgaa
aaaagcctggttgaacaggtaatgggcgcaacaataacccgccaaattggtaaagaaatt
gttcgcggtatttttggcatgcttaccggcaagaaaacacggtcaaaaaccggtggcgga
ctttttggattctaa
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