Pedobacter sp. KBS0701: FFJ24_017420
Help
Entry
FFJ24_017420 CDS
T06361
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FFJ24_017420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pek03021
]
FFJ24_017420
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_017420
Enzymes [BR:
pek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FFJ24_017420
Transcription machinery [BR:
pek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FFJ24_017420
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FFJ24_017420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
RAD51D_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QDW26503
LinkDB
All DBs
Position
complement(4334547..4335539)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVIMQKSTDFDGTFEFRPLEPGFGVTIGNALRRILLSSLEGYAITTIRFS
GVSHEFSTMKGVVEDLTDIILNLKQVRFKKTGDSGDSEKVFIIVNGQDQFKAGDITKFSN
NFTVLNPEHVICNMDKSVTLEVELTINKGRGYVPAEENKVADAVVGVIAIDSIYTPMKNV
KYTIENFRVEQKTDYEKLVLDISTDGSIHPEEALKEAAKILIQHFMLFSDENLVLESQAK
EETKEVDEEILHMRKILKTELVDMDLSVRALNCLKAADIRTLADLVSYDVADMLKFRNFG
KKSLTEIQELVKSKGLSFGMNLSKFKLDEE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttagcatttcagaaaccagacaaagtgatcatgcagaaatcaaccgatttc
gatggcacatttgaatttcgtcctttagagcccggtttcggtgtaacaattggtaatgcc
ttaagaagaattttactttcttcgttagaaggttatgctattactactattcgtttttca
ggcgtatctcacgaattttctaccatgaaaggtgttgtagaagatttaactgatattatc
ttaaacttaaaacaagttcgttttaagaaaacaggtgattcaggtgattctgaaaaagtt
ttcatcatcgttaatggtcaagatcagtttaaagctggtgatatcactaaattctctaac
aactttacagttttaaaccctgagcatgtaatttgcaatatggataaatctgttactttg
gaagtggaattaaccatcaataaaggacgtggttatgtacctgctgaagaaaataaagtt
gctgatgctgttgtaggtgtaatcgcaatcgattcgatttatactccaatgaaaaatgta
aaatacacgatcgaaaactttcgtgttgagcaaaaaacggattatgaaaaattggtttta
gatatctctactgacggttcaattcatccggaagaagcattaaaagaagcggctaagatc
cttatccagcactttatgttattctctgatgagaatttggtattagaatctcaggctaaa
gaagaaactaaagaagttgacgaggaaattttacacatgcgtaaaatccttaaaactgaa
ttggtagatatggatctttcagttagagcattaaactgcttaaaagctgctgacatccgt
actttagctgatttagtttcttacgatgttgctgatatgttaaaattcagaaacttcggt
aagaaatctttaacagagatccaggaattagtaaaatcaaaaggtttatcatttggtatg
aacctgtctaaatttaagttagacgaagaataa
DBGET
integrated database retrieval system
