Pedobacter sp. KBS0701: FFJ24_025530
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Entry
FFJ24_025530 CDS
T06361
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
pek
Pedobacter sp. KBS0701
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pek03009
]
FFJ24_025530
Enzymes [BR:
pek01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
FFJ24_025530
Ribosome biogenesis [BR:
pek03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FFJ24_025530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
QDW28015
LinkDB
All DBs
Position
complement(6256309..6257835)
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AA seq
508 aa
AA seq
DB search
MINKNNRNSRDDKSKPGSRRTEGRSSSAGSDRKRSDDKDSKFKKSSDSKEGFRPRSADGK
DFKSKSFGDKKDFKPRSGGRDFKSKDSEPQSFKFGDREFKSKDSGAEDRGFKPREGKSRD
YKPRTGDRDFKSREGGSRDYKPRTGDRDFKPREGGARDYKPRTGERDFKSKDGDSRDFKP
RTGDRDFKSRDGGSRDYKPREGGYKDYKSRGKSDDFKPSAGSSRDVKPREPKEGDTRPFR
KREEAQPRDTEFNRPERTVITQGRKTNEDKGLIRLNRYISNAGICSRRKADELIIAGIIT
VNGEAVTELGHKVDPAKDLVRYNGELLKREKKVYVLLNKPKDYITTTDDPQERRTVMQLV
DKASRERIYPVGRLDRNTTGLLLMTNDGDLADKLSHPKNGITKIYNVELDKSLSQGDLNK
IAFGLELEDGLIKPDNISYVAGGTKKEIGIQIHSGKNRIVRRIFEHLGYNVEKLDRVVYG
NLTKKDLPRGRWRYLEEHELIQIKHLIK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgataaataaaaacaacaggaacagtcgggatgacaagtccaaaccaggcagtcggaga
acagaaggcagaagtagttcggccgggtctgacagaaaaagatcagacgacaaagacagc
aaattcaaaaaatcatccgattcaaaagaaggcttcagacccagaagcgcagacggtaaa
gatttcaaatcaaaatctttcggagacaaaaaagatttcaaaccaagatcaggcggacgt
gatttcaaatcaaaagattcggagccacagagttttaaattcggcgatcgtgagtttaaa
tctaaagattcaggagcagaagaccgtggttttaaaccaagagaaggtaaatcaagagat
tacaagccaagaaccggcgaccgcgatttcaaatcgagagaaggtggatctagagattac
aaaccaagaacaggagacagggattttaaaccaagagaaggtggtgcaagagattataag
ccaagaacaggagagcgtgatttcaaatctaaggatggagattcgagagattttaaaccg
agaactggcgaccgcgactttaaatcgagggatggtggatcaagagattacaaaccaaga
gagggtggctataaagattacaaatcaagaggcaaatcagatgatttcaagccaagtgct
ggaagttcaagagatgtaaagcccagagaaccaaaggaaggtgatacccgtccgtttaga
aaacgtgaggaggcacagccaagagatacagaatttaaccgcccggagcgcactgttatt
actcagggccgtaaaacaaacgaagataaaggcttaatccgcctaaacagatatatttca
aatgcaggcatctgctctcgtcgtaaagccgatgagttaattattgcaggtattattacc
gtaaacggcgaagcggttaccgaactgggacataaagttgaccctgcaaaggatttggtt
cgttataacggcgaattattaaaacgcgagaaaaaagtttacgttttattaaacaaacca
aaagattacatcaccactaccgacgatccacaggaacgccgtacggtaatgcaattggtt
gataaagccagtcgtgagcgtatttacccggttggacgtttagatcgcaataccacaggc
ttgttgttaatgacaaacgatggtgatttagccgataaattatcacaccctaaaaacggt
atcactaaaatttacaatgtcgaactggataaatctttatcacaaggcgatttaaacaag
attgcctttggtttagagttagaagatggtttgattaaacctgataacatttcttacgtt
gcaggtggaaccaagaaagaaatcggtatccagatccacagtggtaaaaacaggattgtt
cgccgtattttcgaacacttaggttataatgtagaaaaattagaccgtgtagtttatggc
aatttaacaaagaaagacctgccacgtggcagatggcgctatcttgaagaacatgaactg
attcagattaaacatttaataaaataa
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