Candidatus Pelagibacter sp. IMCC9063: SAR11G3_00390
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Entry
SAR11G3_00390 CDS
T01465
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pel
Candidatus Pelagibacter sp. IMCC9063
Pathway
pel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR11G3_00390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pel03021
]
SAR11G3_00390
03019 Messenger RNA biogenesis [BR:
pel03019
]
SAR11G3_00390
Transcription machinery [BR:
pel03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SAR11G3_00390
Messenger RNA biogenesis [BR:
pel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAR11G3_00390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
Fungal_virus_P2_C
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AEA80865
LinkDB
All DBs
Position
complement(355416..356684)
Genome browser
AA seq
422 aa
AA seq
DB search
MNLQELKDKTPADLILEAEKLDIENPSTMRKQEILFAILKKLAEKNEQITASGVLETLQD
GFGFLRAMESNYLPGPDDIYVSPSQIKRFGLRKGDTVEGEIRAPKEQERYFALLQVNKIN
FEDPEKTRNKINFDNLTPLYPQDKLKLEIETTKIEKKADVTTRLIDLIAPIGKGQRSLIV
SPPRTGKTVVLQNIAHSITTNHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAM
RHVQVAEMVIEKAKRLAEHKKDVVILLDSITRLGRAYNAVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIISTALIETGSRMDEVIFEEFKGTGNSEVIMDRKVADKRIYPA
IDITKSGTRKEELLLSKEELSKMNVLRRIINPMGTMDAVEFMIGKLRETKNNAEFFDSMN
KS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttcaagaactcaaagataaaacgcccgccgatttaattttagaagcagaaaaa
ctagacattgaaaaccctagtacaatgcgaaaacaagaaattttgtttgcaattctaaaa
aaacttgcagaaaaaaatgaacagattacggccagcggggttttggaaactttgcaagat
ggttttggttttcttagagcaatggagtctaattacttacctggaccagatgatatttat
gttagtccgagccagattaaaagatttggtttgagaaaaggagatacggtagaaggtgaa
attagagcgcccaaagaacaagagcgatattttgcattacttcaagttaacaagattaac
tttgaagatcctgaaaagactagaaataaaattaattttgacaatctaactccactgtat
cctcaggataaattaaaactagaaattgaaactactaaaattgaaaaaaaggctgacgtc
acaactagacttatagatttaatcgcgcctattggaaaaggacaaagatcactaattgtt
tcgcctcctagaaccggaaaaacagtggtgttacaaaacattgctcactctattacaacc
aatcacccagaggtttacttaattgttttgttgattgacgaaagaccagaggaagtaact
gatatgcagagatctgtaaaaggagaagtcgtaagctctacttttgatgaaccagcaatg
agacacgtacaagtagctgagatggtaatagaaaaagcaaaaagacttgcggagcataaa
aaagacgtggtcattttactagactctataacaagattaggaagagcttataatgctgtg
gtcccaagttccggcaaagtgttaactggtggtgtagatgcgaacgcattacaaagacca
aaaagattttttggtgctgcaagaaacatagaagaaggtggatcactaactattatttca
acagcactaatagaaacaggttcgagaatggacgaagttatttttgaagaatttaaaggt
acgggtaactcagaagtaattatggacagaaaagttgctgataaaagaatttatcctgca
atagatattaccaagtctggaactagaaaagaagaactgcttttgtctaaagaagaactt
tctaaaatgaatgtactaagaagaattatcaacccgatgggaactatggatgcggttgaa
tttatgattggaaaattaagagagacaaaaaataatgcagagttttttgactctatgaat
aagtcttaa
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