Candidatus Pelagibacter sp. IMCC9063: SAR11G3_01123
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Entry
SAR11G3_01123 CDS
T01465
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pel
Candidatus Pelagibacter sp. IMCC9063
Pathway
pel03410
Base excision repair
pel03430
Mismatch repair
pel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAR11G3_01123
03430 Mismatch repair
SAR11G3_01123
03440 Homologous recombination
SAR11G3_01123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pel03400
]
SAR11G3_01123
DNA repair and recombination proteins [BR:
pel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SAR11G3_01123
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SAR11G3_01123
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAR11G3_01123
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEA81598
UniProt:
F2I184
LinkDB
All DBs
Position
991884..993638
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AA seq
584 aa
AA seq
DB search
MIKNSVSDRNWILSKFDENKVKKATQELGVSEVLCRLLAIRNVEADQSLDFLNPKIKNSM
PNPFLLKSMDEAVKLIIKHIKEESHICIYGDYDVDGASSTSILARFLRNFTNNFFIFIPD
RIQDGYGPNLKIFEDIASKGVKLIITVDCGTTSFEPIEYAKSKNIDVVVIDHHQSTETLP
IANAIVNPNRFDETSNLTYLCAAGVAFLVLSGIVTRLREEDFFKKKNIQEPNLLNYLDLV
ALGTVCDVVPLQGLNRAFVFQGLKVLQKRNNLGIKTLSDVANINSKISTYHLGYIIGPKI
NAGGRIGKADHGANLLLTEDPEIAFKISKELNQLNEKRKNIEGIILEEAINIAKHKDNNP
VLVVSSNTWHEGIIGIIASRLKDHFNKPTFVINFEGDYGKGSARSLPGFDIGSAVVKAKQ
SEIITKGGGHKMAAGFSINQDKADEFEIFLIDLFNKSGCQSSKEKDLYIDSVLASSAVNE
KFFNEIDKLAPFGSANREPRFVIENVSITKSLILKESHIKAFCKTSNNSKINLISFNSVN
TPIGSYLLNAKNKKYDIAGRLSLNEWNGKREVQFLLDDLAISTD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaattccgtttctgaccggaattggattttaagtaaatttgacgaaaacaaa
gtaaaaaaagccactcaagaactgggtgttagtgaagtcctttgtagacttttagcgatt
agaaatgtggaggcagatcagtctctcgattttttaaatcccaaaattaaaaattccatg
cctaacccttttttattaaaatctatggatgaggctgttaagttgataattaagcacatt
aaagaagaaagtcacatctgcatttatggtgattacgatgttgatggagcatcatcaact
tcaattttagcaagatttttaagaaattttactaataatttttttattttcataccggat
agaatacaggatggttatggacccaatttaaaaatttttgaagatattgcgtccaaagga
gttaagttaattattactgttgattgtgggactacgtcttttgagcctattgagtatgct
aaatcaaaaaatattgacgtagttgtaatagaccatcaccaatcaacagaaactttgccc
atagcaaatgccattgtaaatcctaatagatttgatgaaacgtcaaacttaacctacttg
tgcgctgctggtgtagcatttttggtcttgtctgggattgtcactagacttagagaggaa
gatttctttaaaaagaaaaatattcaggagcctaaccttcttaactatttagacttagtc
gcactgggaactgtttgtgatgtagttcctctccaaggattaaatagagcgtttgttttt
caaggattaaaagttttgcaaaaaagaaacaatttaggaattaagactttatctgatgtt
gcaaatatcaattccaaaatatcaacttatcatcttggatatataattggtcctaaaatc
aatgctggtggaagaataggtaaggcagatcatggagccaaccttttattaacagaggat
cctgaaattgcatttaaaatctctaaagaattgaaccaactcaatgaaaaaagaaagaat
attgagggtattatcttagaagaagctataaatatagcaaagcacaaagacaataatccc
gtattagtagttagttcaaatacctggcacgaaggtattatcggaatcattgcgagcaga
ttaaaagatcattttaacaaacctacatttgttattaactttgaaggtgattatggaaaa
ggatcagcgcgatctttgccaggcttcgacattggtagtgctgtggttaaagcaaaacag
tccgaaattataaccaaaggaggagggcacaaaatggctgccggtttttctattaatcaa
gataaagctgatgaatttgagatttttttaattgacctttttaacaaaagtggctgccaa
tcatctaaagaaaaagacctttatatagatagcgtattagcctcaagcgctgtaaatgaa
aaattttttaatgaaatagacaagttagcacctttcggatctgccaatcgtgaacccagg
tttgttattgaaaatgtatctattaccaaatcattaatattaaaagaatcacacataaaa
gctttttgcaaaacatccaacaattccaaaattaatcttatttccttcaatagcgtcaat
acacccataggatcttatctattgaatgcaaaaaacaaaaaatacgatattgctggaaga
ttatctttaaatgagtggaatggaaaaagagaagttcaatttcttcttgatgatttagct
atatctaccgactga
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