Candidatus Pelagibacter sp. IMCC9063: SAR11G3_01229
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Entry
SAR11G3_01229 CDS
T01465
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pel
Candidatus Pelagibacter sp. IMCC9063
Pathway
pel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAR11G3_01229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pel03021
]
SAR11G3_01229
03400 DNA repair and recombination proteins [BR:
pel03400
]
SAR11G3_01229
Enzymes [BR:
pel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAR11G3_01229
Transcription machinery [BR:
pel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAR11G3_01229
DNA repair and recombination proteins [BR:
pel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAR11G3_01229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_LcnD
SIKE
gerPA
Motif
Other DBs
NCBI-ProteinID:
AEA81704
LinkDB
All DBs
Position
complement(1080999..1085165)
Genome browser
AA seq
1388 aa
AA seq
DB search
MSRELSNLFSKKISKDVFSKIKISLASPEKIKSWSFGEIKKPETINYRTFKPEKDGLFCA
RIFGPVKDYECLCGKYKGMKFRGIICEKCGTEITKSNVRRDRMGHIDLATPVSHIWFLKS
LPSRIALALDLKLKDLEKVLYYEHFIIIEPGLTPFHRNQIVSEEEFLKAQEEFGEDSFTG
GIGASAIRDCLANLDMEADRDRLREELPNITSKVNEERTIKRLKLIESFIASGNKAEWMV
LTTLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMDLRAPDIIVRNEKRM
LQESVDALFDNGRRGRVITGTGKRPLKSLAEMLKGKQGRFRQNLLGKRVDYSGRSVIVSG
PELKLHQCGLPKKMALELFKPFVYARLDKLGYATTIKQAKKIVEKEKQEVWDILDEVIRQ
HPVLLNRAPTLHRLGVQAFEPVLTEMKAIQLHPLVTAAFNADFDGDQMAVHVPLSIEAQL
EARVLMMSTNNILHPANGKPIIVPSQDMVLGIYYLSQEPLENKDEKPQGYFLNINEIEQA
IEGGNIHIHSKIISRFETKDDKGNLIFKKFESTAGRFIISNILPKNKDIKFDLINQTLAK
KNISEVIDKVFRFCGQKETVIFCDRLMSLGFKNAFKAGISFGKDDLIIPESKKDIIKDAK
KLVEEYEDQYAEGLITKGEKYNKVIDQWSKCTDKIASEMMDNISTPKKDKEGKIQINSVF
MMADSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTILEYFTSTHGARKGL
ADTALKTANSGYLTRRLCDVSQDVIISSLDCGNDKPITIGEIIEGGNIMVSLADRSLGRY
AAEDIKNSLTGEVIVKKKQMIDEERCELIEAAGVKTAKVYSVITCSSQKGVCQKCYGRDL
ARGKPVSVGECVGMIAAQSIGEPGTQLTMRTFHVGGTASFKEESSVMAPSDGVLKLLSKN
LVEDSSKNLIIMGRNIEITIEKDGYVKASYKVPYGTKLFVRPDQPVKKNQKICEWDPYTL
PVIAETAGIVNYVDLVDGSSISDKTDENTGISSKIVLDWRSQSKSLDLKPRITLRDKKDD
VVKKADGNEARYYLSPETILSVADGSTVNAGDVLARLPKATSKTKDITGGLPRVAELFEA
RKPKEGAIIAENDGKIIFGKEVRGKQKITIQGEDGVESNYLIPKGKQINFNPGEGISKGE
YLLDGSPATHDILKILGVEYLTEYFVNEVQDVYRLQGVVINDKHIEVILRQMLRKVDIKN
PGDSNYLLGEVIDKIDVLNINAELKKEGKKQIVADPVLLGITKASLQTKSFISAASFQET
TRVLTDAAIKGKSDDLYGLKENVIVGRLIPAGSGMSRIRLNNEAQKKDIELQEKIKNQKS
EPVEEAIQ
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgagtagagaactatcaaatttattttctaaaaaaattagcaaagacgttttttctaaa
ataaaaatatctcttgctagtcctgaaaaaattaaatcttggtcttttggagaaataaaa
aaaccagagactattaattatagaactttcaagcctgaaaaagatggcttattttgtgca
agaatttttggtcctgtcaaagattacgaatgtctatgtggaaaatacaaaggtatgaag
ttcaggggtattatttgcgaaaaatgtggaactgaaattactaaatctaatgttagaaga
gatagaatgggccacattgatttggctacacccgtttctcacatttggtttttaaaatca
ctaccaagcagaattgcacttgctttggatttaaaattaaaagatctagaaaaagtttta
tattacgaacactttatcattatagagcctggattaactcctttccacagaaatcaaatt
gtttcagaagaagaatttttaaaagcccaagaagaatttggagaagattcttttacgggt
ggtattggcgcttctgctattagagattgccttgccaacttagatatggaagctgataga
gataggcttagagaagaacttcctaatattacatcgaaagtgaatgaagaaagaactatc
aaaagattaaaattaattgaatcattcattgcttcaggaaataaagctgaatggatggtc
ctaactactttgccagtaattccgcctgaacttagacctctagttcctctagatggtgga
agatttgcaacttcggatttgaacgatctttacagaagagtgattaatagaaataatcgt
ttaagaagattaatggatttaagagctcctgatatcatcgttagaaatgaaaaaagaatg
cttcaagaatctgttgatgctctttttgacaatggtagaagaggtagagttataacagga
acaggaaaacgacctttaaaatctttagcagaaatgcttaaaggaaaacaaggaaggttt
agacaaaacttattaggtaagcgagttgattattcaggaagatccgtaattgtttctgga
ccagaactaaagttacaccaatgtggtctgcctaaaaaaatggcattagagctatttaaa
ccttttgtttatgcaagattagacaagcttggttatgcaacaactattaagcaagcaaaa
aaaatagttgaaaaagaaaaacaggaagtgtgggatattttagatgaagttatcaggcag
cacccggttcttctaaatagggcccctactttgcatagattgggcgttcaagctttcgaa
ccagtattgaccgagatgaaagctattcaattacatcctttggtaacagcagcatttaac
gctgactttgatggtgaccaaatggcagttcacgttcctttaagtattgaagcgcagttg
gaagctagagttttgatgatgtccacaaacaacattcttcacccagctaacggaaagcca
attattgtacctagtcaagacatggtactaggtatttattatttatctcaagaaccatta
gaaaataaagatgaaaagcctcagggttattttttaaatattaatgaaatcgaacaagcc
attgagggaggaaatatacatattcactctaaaattatctcaaggtttgaaacaaaagat
gacaagggtaatttaatttttaaaaaatttgaaagtacagcaggcagatttattatttct
aatattttacctaagaacaaagatattaaatttgatttaattaaccaaactttagctaag
aaaaatatttcagaagttattgacaaggtatttagattttgcggacaaaaagaaacagtt
attttttgcgatcgtttaatgagcttgggttttaaaaatgcatttaaagctggtatttct
tttggtaaagacgaccttattattccagaaagtaaaaaggatataatcaaagacgcaaaa
aaattagtagaagaatatgaagaccagtatgctgaaggtttgattactaaaggcgaaaaa
tataataaagtgatcgatcagtggtctaaatgtactgataaaattgcatcagagatgatg
gacaatatttccactcctaaaaaagacaaagaaggaaaaatacaaattaattctgtattt
atgatggcagactctggagctaggggatcagcagcccagatgaagcaattagcgggtatg
cgtggattgatggcaaaaccatctggtgaaattatcgaaactccaattatttcaaacttt
aaagaaggtttgactattttagaatatttcacttcaactcacggagcaagaaaaggcctt
gcagatacagccttaaaaacagcaaactctggttaccttactagaagactttgtgatgtt
tctcaggatgttatcatttcatctttagattgtggtaacgataagcctattacgatcggt
gagattatcgaaggtggaaatattatggtgagtttggctgacaggtcactaggtagatat
gcagctgaagatattaaaaactctttaacaggggaagttattgttaagaaaaagcaaatg
attgacgaagaaagatgtgaattaattgaagctgctggagtaaaaacagctaaagtttat
tcagttattacctgctctagtcaaaaaggtgtttgtcaaaaatgttatggtcgagattta
gcaagaggaaaaccagtttcagtaggtgagtgtgttggaatgatagctgcgcaatctatt
ggtgagcctggtactcagttaaccatgagaacctttcacgtgggaggtacagcctcattt
aaagaagagtcatcagttatggcaccatcagatggtgtattgaaattactaagtaaaaat
cttgtggaagattcctctaaaaatttaattatcatgggaagaaatattgaaatcactatt
gaaaaagatggatatgtgaaagcttcttataaagttccctatggaactaagttatttgta
agaccagatcagcctgtaaagaaaaatcaaaaaatttgtgaatgggatccttacacattg
ccagttattgctgagacagctggaattgtaaattacgttgatttagttgatgggtcgtcg
atttcagacaagacagatgaaaacacaggtatatcatctaaaatagttttggattggaga
tctcaatcaaaaagcttagacctaaaaccaagaattacgcttagagataaaaaagatgac
gtagtcaaaaaagcggacggtaatgaggctagatattatttatcaccagaaacaatttta
tcagtagctgatggctctacagtaaatgctggagacgtgttagcaagattgccaaaagca
acatctaaaacaaaagatattacaggtggtctgccaagggtagctgaattgtttgaagca
agaaaaccaaaagaaggagctatcattgcagaaaatgatggaaaaataatcttcggtaaa
gaggttagaggaaaacaaaaaattaccatccaaggagaagatggagttgaatcgaattat
ttaattccaaaaggaaaacaaatcaatttcaatcctggcgaaggtatttctaaaggagaa
tatcttttagacggaagtccagctacacatgatattttaaaaatcttaggtgttgaatat
ctaacagagtattttgttaatgaggttcaggatgtttaccgtttacaaggtgtggttatt
aacgataagcatattgaagtaattttgagacaaatgttgagaaaagtagatattaaaaat
cctggagatagtaattacttgttgggagaagttatagacaaaattgatgttcttaatatt
aacgctgagttgaaaaaagaaggtaaaaagcaaattgttgctgaccctgtgttgctaggt
attacaaaggcttcactacaaactaaatcgtttatttcagcagcttctttccaagaaact
actcgagtattgaccgacgctgccattaaaggaaaatctgatgacttgtacggactaaaa
gagaacgttatcgttggtagattgatacctgcaggtagtggaatgagtcgtatacgacta
aataacgaagctcagaaaaaagatattgaacttcaagagaagattaaaaatcaaaaatca
gagccagttgaagaagcaattcagtaa
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