Candidatus Pelagibacter sp. IMCC9063: SAR11G3_01230
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Entry
SAR11G3_01230 CDS
T01465
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pel
Candidatus Pelagibacter sp. IMCC9063
Pathway
pel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAR11G3_01230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pel03021
]
SAR11G3_01230
03400 DNA repair and recombination proteins [BR:
pel03400
]
SAR11G3_01230
Enzymes [BR:
pel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAR11G3_01230
Transcription machinery [BR:
pel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAR11G3_01230
DNA repair and recombination proteins [BR:
pel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAR11G3_01230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF4441
Peptidase_M23
Mnd1
PCB_OB
PRMT_C
Motif
Other DBs
NCBI-ProteinID:
AEA81705
LinkDB
All DBs
Position
complement(1085168..1088947)
Genome browser
AA seq
1259 aa
AA seq
DB search
MRLVAYDINEEAQTKQILSAKEQEVYMSDVPLMTEKGTFVVNGTDRVVVNQMHRSPGLFL
DHDKGKGHSSGKLLFNCRVIPYRGSWLDLEYDIKDILYFRIDRKRKIPVTTLLMALGHAK
DELLNLFHKSIRFDFTNENTCKTKFIASGYKNSKIRFDLINADTNKKVVKEGTKIPLPLA
MKFEKEGLKNILINFEELHGRYFSSDIINEKTGEVYFESGDEITVETLEKLNHLNIKTFY
LADIDGMNIGSYLRNTLVVDKNNNSDEACMDIYRVLRPGEPPTPETSRNLFNNLFFNNTR
YDLSDVGRVKLNSKLDLDVDVKNTVLTKEDILRIVEKMLRLKDGKEDTDDIDHLGNRRVR
SVGELVENQFRVGLVRMERAIKEKMSSVEIDTVMPQDLINSKPIAASLKEFFGTSQLSQF
MDQTNPLAEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINS
LATYSKVNRYGFIESPYRVVKNSKVTKEIHHLSAMEEGKFTIAQANSSLKDDSSFKDELV
SCRKSLGFELAKPDNIDYMDVSPKQVVSVAAALIPFLENDDANRALMGSNMMRQAVPLIK
NESPLVGTGMEKDVALDSGATIVAKREGVVEKIDGKRIVVKATSEKDLTISSVDIYNLQK
FQRSNQNTCTNQRPLVKVGDVVKQGDVIADGPSTQFGELALGKNVMVAFMPWLGYNFEDS
ILISERCVSEDVFTSIHIEEYDVMARDTKLGPEEITRDIPNTSEEALRNLDESGIVYVGA
EVKPGDILVGKLTPKGDTKVTSEEKLLRAIFGEKAIDVRDTSLKMPSGTGGTVVEVRVFN
RHGIEKDERALSIEKAEIESVLEDKYAEEAILELNIKSRAIEILEGSSLGDDYKKITKGT
KLTKEILSELTLGETLKLSTDSEKSLSDLAILKEQYSKAKKDIELRFDDKIDKIERGDEL
LPGVMKMVKVFVAMKRKLQPGDKMAGRHGNKGVISRIVPVEDMPYMANGKQVDIVLNPLG
VPSRMNVGQILETHLGWACSELGEKIKKILDEYQKTTKNAAHTKDALSSIYNDKEIEKEI
QNFTNNELKDVLQNLSSGVPIATPVFDGASVEDVTDMLKFSGLPESGQTTLYDGRTGEKF
DREVTVGIIYMLKLYHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLQEILTVKSDDVAGRTKVYETIVKGDDDFESGIPESFNVLVKEIRSLALNLELN
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
ttgcgattagttgcttatgatattaacgaagaagctcaaaccaaacaaattctttctgca
aaagaacaggaagtttacatgagtgatgttcctttgatgactgaaaaaggaacttttgtt
gtgaacggaacggaccgtgtagtagttaatcaaatgcacagaagtccaggattgttcttg
gatcacgataaaggaaaaggtcactccagcggaaagcttttatttaattgtagagtaatt
ccatacagaggttcttggttagaccttgagtacgatattaaagatattttatattttaga
atagatagaaaaagaaaaattccagttaccactctgttaatggcattaggtcatgctaaa
gatgagttgttaaacttatttcacaaatctattagatttgattttactaatgaaaataca
tgcaaaacaaagtttattgcatctggttataaaaactccaaaataagatttgatttaatt
aatgcagatactaataaaaaagttgtaaaagaaggaactaaaattcctctacctttggca
atgaagtttgaaaaagaaggtttaaaaaacattttaattaattttgaagagcttcatgga
agatacttttctagtgatattattaatgaaaaaacaggtgaagtttactttgaatctggc
gatgagattactgtagaaacattagaaaagctaaatcatttaaatatcaaaactttctat
cttgcggatatcgatggaatgaatattggttcttacttaagaaatacgttggtagtagac
aaaaacaacaattcagatgaagcttgtatggatatttaccgtgttttaagaccaggtgag
cctccaacaccggaaacttctagaaatttatttaataacttgtttttcaataacactcgt
tacgatttatccgacgtgggtagagtaaagctaaatagcaaattagacttagatgtagat
gtaaaaaatacagttttaaccaaagaagatatacttagaattgttgaaaaaatgcttcgt
cttaaagatggcaaggaagataccgacgatattgatcacttaggaaacagaagagttaga
tctgtaggtgaactagtggaaaaccaatttagagttgggttagttcgaatggaaagagcc
attaaagagaaaatgtcttctgtagaaattgatactgtcatgccacaagatctcattaac
tcaaaacctatagccgcatcattaaaagaattttttggtacctctcaactatctcaattt
atggaccaaactaatccattagctgaaattacacacaaacgaagagtttctgctttaggg
cctggtggattaacaagagaaagagctggctttgaggtaagggatgtgcacccgacgcat
tacggaagaatttgtccaatcgaaactccagagggaccgaacattggtttgattaatagt
ttagctacttattcaaaagtaaatagatatggatttattgaaagtccttacagagtagta
aaaaattccaaagttactaaagaaattcatcatctttcagcaatggaagagggtaagttt
actatagcccaagcaaattctagcttgaaggatgacagttcatttaaagacgagctagtt
tcttgcagaaaaagccttggatttgaattggcaaaaccagacaatattgattacatggac
gtatcacctaaacaggtggtttcagtcgccgctgcactaattccttttttagaaaatgat
gatgctaacagagcattgatgggatctaacatgatgagacaagctgttcctttgattaaa
aatgagtctcctttagttggaaccggaatggaaaaagatgtggctttagattccggagct
accattgttgcaaaaagagaaggtgtggttgagaaaattgacggaaaaagaattgttgta
aaagcaacttctgaaaaagatcttactatttccagcgttgacatttataatttacaaaaa
tttcaaagatcaaaccagaacacctgtactaatcaacgacctttagttaaagtcggagat
gtagttaagcaaggggatgtcattgcagatggaccttcaactcaatttggagaattagca
ttaggaaaaaatgtaatggtggcatttatgccatggcttggttacaattttgaagattct
atcttaatttctgaaagatgtgtttctgaagatgtatttacctctatccatattgaagaa
tatgacgtgatggcaagagataccaaattaggacctgaagaaattacaagagacattcca
aatactagtgaagaagctttacggaatctagatgaatcaggaattgtttatgttggtgca
gaagtgaaacctggtgatattttagttggaaaattaactcccaaaggagatacaaaagtt
acgtcagaagaaaaattattgagagccatttttggtgaaaaagcaattgatgtaagagac
acttctttaaaaatgccttctggcaccggtggtacagttgtcgaagttagagtttttaat
cgtcatggtattgaaaaagatgaaagagccctttctattgaaaaagctgagatcgaatct
gttttagaagacaagtatgctgaagaagcaatccttgaacttaacattaaaagtagagca
atcgaaattttagaaggttctagcttgggtgatgattataaaaaaattaccaaaggaacc
aaactaacaaaagaaattttatcagaactgacattgggtgaaaccttgaaattatcaaca
gattctgaaaagtcattatctgatctagcaattttgaaagaacagtactctaaagcaaaa
aaagatattgaattaaggtttgatgacaagattgacaaaatagaacgaggtgatgaattg
ttacctggtgttatgaaaatggtaaaagtttttgttgcgatgaaaagaaaattgcagcct
ggtgataaaatggcaggtaggcacggtaacaaaggtgttattagtcgaatagttcctgtt
gaagatatgccttacatggccaatggtaagcaagttgatattgttctaaatcctcttggt
gtgccaagtcgtatgaatgtaggacaaattttagaaactcatttaggctgggcttgttca
gaattgggtgagaaaattaaaaaaatcctagacgaatatcaaaagaccactaaaaatgca
gctcatactaaagatgcattatcctctatttacaatgataaagaaattgaaaaagaaatt
caaaattttaccaacaatgaattaaaagatgttttgcagaatctttcttcaggcgttcct
attgccactccagtatttgacggtgcaagtgtggaagatgttactgacatgttgaaattt
tctgggctgccagagagtggacaaactactttatacgatggaagaacaggcgagaagttt
gatagagaagtgactgttgggataatctatatgcttaaattgtatcatatggtggatgac
aaaatacacgcaagatcaactggtccttatagtttagttacacagcaacctttaggtgga
aaagctcaatttggtggacaaagatttggtgagatggaagtttgggcgctagaagcttat
ggtgccgcttatacactacaagaaattttaactgtgaaatctgacgatgttgcaggaaga
actaaagtatacgaaaccattgttaaaggagatgacgattttgaatcgggtatcccagaa
tcgtttaacgtattagttaaagaaattagatcattagcattaaacttggagcttaattaa
DBGET
integrated database retrieval system
