Candidatus Pelagibacter sp. IMCC9063: SAR11G3_01335
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Entry
SAR11G3_01335 CDS
T01465
Name
(GenBank) cytoplasmic axial filament protein CafA and Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pel
Candidatus Pelagibacter sp. IMCC9063
Pathway
pel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR11G3_01335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pel03019
]
SAR11G3_01335
03009 Ribosome biogenesis [BR:
pel03009
]
SAR11G3_01335
Enzymes [BR:
pel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SAR11G3_01335
Messenger RNA biogenesis [BR:
pel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAR11G3_01335
Ribosome biogenesis [BR:
pel03009
]
Prokaryotic type
rRNA processing factors
SAR11G3_01335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
AsnC_trans_reg_3
Motif
Other DBs
NCBI-ProteinID:
AEA81810
UniProt:
F2I1U6
LinkDB
All DBs
Position
1185280..1187205
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AA seq
641 aa
AA seq
DB search
MEKEILIDASQEKQTRVAIKSDNGVEEYEYENEQKKQLKGNIFLGRISRIEPSLQAAFVD
FGNERHGFLAFNDIQTQYYQIPLADKELILKEEEELRKELEEETNELSPEDSNSSNESES
DDSEDNSIESTPDEDLKNSEDREDSSEIESPELEKNSYEKKISDIRAKKKFKRYRIQEVI
KPGQIILLQIVKEERGKKGAALTTFLSLAGKYIVLMPNTAKGGGISRKIFNSQDRKNIRG
IIKELTIPETMGLIVRTAGAKKTQNEIKNDLDVLVQIWEEIKEKTLTSNAPTMIHEEGDV
IYRTIRDFFSNDIKEVTVDGAKGFDKAKKYAEIIAKDQVKKIKKYKGKIPLFHSKEIEKY
LNQIFEPRINLKSGGYLIINPTEALVAIDINSGRSTKERNIEKTALNTNIEAAVEIARQA
KLRDLAGLIVIDFIDMENYSNRRLVEKKLKEALRNDKARVQVGKISNFGLLEMTRQRLRE
SSIQWKTILSVESFSQKILKLIEEKIFSIPKVKTVDVDLPKKIIDFIQANMKDEIDFFEK
KFKFKIKFNANPDFLSEDFKISFKDSKKKELEELKNEEEVAIEEPFNKEKAFHKDTSDSD
DKPGKKTFHKKKFRKKKFFKKRTGSSSTNTKEKVVVKKDSD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagagattcttattgatgcttctcaagagaaacaaacgagagttgctatcaaa
tctgataacggagttgaagagtatgagtatgaaaatgagcaaaagaaacagcttaaggga
aatatattcctaggccgaataagtagaatagagccttctttacaggcagcttttgttgat
tttggaaatgagcgtcatggctttttagcatttaatgacattcaaactcagtattatcaa
atacctctagctgacaaagagctaattcttaaagaagaagaagaattaaggaaagaacta
gaagaagaaactaatgaacttagtcccgaagattctaattcgtccaacgaatctgaaagt
gatgattctgaagacaattctattgaaagtacaccagatgaggatttaaaaaattctgaa
gacagggaagacagctctgaaatagagagtcctgagttagaaaagaattcttacgaaaaa
aaaatcagcgatattagagctaagaagaaatttaaaagatatagaatccaagaagtaatc
aaacctgggcaaataatacttcttcaaattgtaaaagaagagcgtggaaaaaaaggagct
gctcttactactttcttatctctggctggaaaatatatagtacttatgccaaacactgcc
aaaggcgggggtatttctagaaaaatttttaattctcaagatagaaaaaatatcagaggc
attattaaagaattaaccataccggaaacaatgggtttgattgtgcgaactgctggtgcc
aaaaaaactcaaaatgaaattaaaaatgatttagatgtactggttcagatatgggaggag
ataaaagaaaaaactttaacgtccaatgctccaactatgattcatgaagaaggagatgtt
atttacagaacaatcagagatttttttagcaatgacataaaggaagtgaccgttgatgga
gcaaaaggttttgataaagcaaaaaaatatgctgagattattgccaaagatcaggtaaaa
aaaataaaaaaatacaaaggtaaaattcccttattccactccaaggaaatagaaaaatat
cttaatcaaatttttgaaccaagaattaatttaaaatcaggcggttatttaatcatcaat
cctaccgaagctttggttgcgatcgatattaactctggaagatctactaaggaacgaaat
attgaaaaaacagccttgaataccaatatcgaagctgctgttgaaattgcaagacaggca
aaacttagagacttggctggtttaattgtaatcgattttattgatatggaaaactattct
aatcgaaggttagttgaaaaaaaattaaaagaagcattacgaaacgataaagctagagtt
caggtgggaaaaataagtaattttggccttcttgagatgaccagacaaagattgcgggaa
agctctattcaatggaaaacaatactaagtgttgaatccttttctcaaaagatactaaag
cttatagaagaaaaaatattttctatcccaaaagtaaaaacagtagatgtggatcttcct
aagaaaattatcgattttattcaagccaatatgaaggatgaaatagacttttttgagaaa
aaatttaaatttaaaataaaatttaatgctaatcctgattttttatctgaagactttaaa
atatcttttaaagacagtaagaaaaaagaactggaagagttaaagaatgaagaagaagtg
gctattgaagagccattcaataaagaaaaagccttccataaggacacttctgattctgat
gataagcctggtaaaaaaacttttcataaaaaaaagtttcgtaaaaagaagttttttaaa
aagagaacaggaagtagttcgaccaatacaaaagaaaaagtggtggttaaaaaagattca
gattaa
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