Candidatus Pelagibacter sp. RS39: B5L73_01170
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Entry
B5L73_01170 CDS
T11425
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pela Candidatus Pelagibacter sp. RS39
Pathway
pela03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pela00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
B5L73_01170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pela03400
]
B5L73_01170
Enzymes [BR:
pela01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
B5L73_01170
DNA repair and recombination proteins [BR:
pela03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
B5L73_01170
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B5L73_01170
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B5L73_01170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ARJ47431
LinkDB
All DBs
Position
210151..211587
Genome browser
AA seq
478 aa
AA seq
DB search
MDKIVIYDTETTNSTIWGSIIEVGAVVVDKNLKEIGKLNIRGRMPEGEVPSAKALLVNST
SIDLLTKGNYSHYDFLGAVENFFSKCAPAMFMGWSNLNFDRRMFHFNFFKGNRYPYATHS
SPNSEHDGLHIARAAQTLNSETLKTELTEAGNPSLALESLSRMQGFDTSASHTAYVDAQN
SLKVLRIIKDKHKENWETFLKTSTKTSVETFLKNEGIYSIFENVKGRNMMYLTSTLHPNH
CFHPSYASWGYVWDLRRDPEPLLKLPVNQLRDILKKYSPKALRVLKTNKAPVILDKEFAL
KQKPYLDLDLETIKKRAQMVRNSENFCKNIQIINREAAEEKEQTKTQEDLLPEETLYEKF
IPNKDTALFKTWHSSSWEDKLRLLDKFQDKRCSWFGQKIIYQEAPQILPPDLYKNIKSEI
ARRILSKNKEKWQTVNMAYNEIDYLRDQADKRDDKIELNKLDEINDFIMSIEKKYEIA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattgtaatttacgataccgaaactacgaattcaacaatatggggatccatt
attgaagttggggctgttgtagttgataaaaatttaaaagaaattgggaagttaaatata
agggggcgaatgccagaaggtgaggtgccaagtgcaaaggctttacttgtaaattcaacc
agtattgatttattaactaaaggtaactattcacattatgatttcttaggtgctgttgaa
aattttttctctaaatgtgccccagcaatgtttatggggtggtcaaatttaaattttgat
cgaaggatgtttcatttcaatttttttaagggtaatcgttatccttacgctactcactca
tcacctaacagtgaacatgatggtttacatatagctagggcagcacaaacattaaattct
gaaactttaaaaacagaattaactgaagcaggaaacccaagtctagcattagaatcttta
tcaagaatgcaaggtttcgacacctcagcaagtcacactgcctatgtagatgctcaaaat
tcattaaaggtccttcgaattattaaagataaacataaagaaaattgggaaacattttta
aaaacatcaactaaaacaagcgtagaaacgtttttaaaaaatgaaggcatatattctatt
tttgaaaatgtgaaaggtagaaatatgatgtatcttactagcacactacatcctaatcac
tgttttcatccatcttatgcatcgtggggatatgtttgggatttaagaagagatccagaa
ccactattaaaattaccggttaatcaattgagagatattttaaaaaaatatagtcctaag
gctttaagagttttaaaaacaaataaagctccagtaattttagacaaagagtttgcctta
aaacaaaaaccttatttagatttagatttagaaacaattaaaaaacgtgcacaaatggtg
agaaatagtgaaaatttttgtaaaaatatacaaattataaatagagaggctgcagaggaa
aaagagcaaactaaaacacaagaagatctattacctgaagaaactttgtatgaaaaattt
attcctaataaagatactgctctttttaaaacctggcacagctcatcttgggaagataag
ttgagattgctagataaatttcaagataaaagatgtagttggtttggtcaaaaaattatt
tatcaagaggcaccgcaaattttaccacctgatttatataaaaatattaaaagtgaaatt
gctagacgtatactaagcaaaaataaggagaagtggcaaacggtaaatatggcatataat
gagattgactatttgagagatcaagcagataaaagagatgataaaattgaattaaataaa
ttagatgaaattaacgattttattatgtctattgaaaagaaatatgaaattgcctag
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