Paenibacillus elgii: ACJ7K1_10690
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Entry
ACJ7K1_10690 CDS
T11011
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pelg Paenibacillus elgii
Pathway
pelg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pelg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACJ7K1_10690 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pelg03021
]
ACJ7K1_10690 (rpoD)
Transcription machinery [BR:
pelg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACJ7K1_10690 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
tify
Motif
Other DBs
NCBI-ProteinID:
XOK63548
LinkDB
All DBs
Position
2420622..2421734
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AA seq
370 aa
AA seq
DB search
MANDQHKEAETELTIDRVKQQLIAQGKEQASLAYKEITEKLAPFDPDPEQINEFVEQLSE
LGIEVGGEPDEGPVFGTDHEEHDLLHDDLSLPPGIKINDPVRMYLKEIGRVPLLSGDDEI
ELAERIQQGDEEAKRRLAEANLRLVVSIARRYVGRGMLFLDLIQEGNMGLIKAVEKFDHT
KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREATPEE
IAKEMDLTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDQEALAPADAAAYELLKE
QLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS
RSKRLKDFMD
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgatcagcacaaggaagcggagacagagcttacgattgatcgggtgaaacag
caactcatcgcgcagggcaaagagcaagcttcgctcgcttacaaagaaattacggagaaa
ctcgctcctttcgatcccgatccggaacaaatcaacgagttcgtcgagcagctcagcgag
cttggcatcgaggtgggcggcgaacctgacgaggggcctgtattcggaacggatcacgaa
gaacatgatctgctgcatgacgatctgtcgctcccgccggggatcaagatcaatgacccg
gtacgtatgtatctgaaggagatcggacgggtgccgctgctttcgggagatgacgaaatc
gagctggcggaacggattcagcagggcgacgaagaagcgaagcgcagactggccgaggcg
aacctccgactggtggtcagtatcgcaagacgctatgtcggccggggtatgctgtttctt
gatttgatacaggaaggcaatatgggtttaatcaaagcggtggaaaaatttgatcacacc
aaaggcttcaaattcagtacgtatgccacatggtggattcgtcaggcgattacgcgcgcg
attgccgatcaggcgagaacgatccggataccggtacatatggtggaaacgatcaacaag
ctcgtacgcgtatccagacagctgctgcaggagcttggccgggaagcgaccccggaggaa
attgcgaaggaaatggatttgacgcccgataaagtgcgggaaattatgaagatcgcgcag
gagcccgtgtcgctcgaaacgccgattggcgaggagaacgattcgaacttgggcgacttt
atcgaggaccaggaggcgcttgcgccggcggacgcggcggcttacgagctgctgaaggag
cagcttgaggatgtgctcgatacgcttacggagcgggaagagaacgtgctgcgtcttcgt
ttcggtcttgatgacggccgcacgcgcacgctggaggaagtgggcaaggtattcggtgtg
acccgggagcgcatccggcagatcgaagccaaggcgctgcgcaagctcagacatccgagc
cgcagcaagcggctgaaagactttatggattga
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