KEGG   Paenibacillus elgii: ACJ7K1_13940
Entry
ACJ7K1_13940      CDS       T11011                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pelg  Paenibacillus elgii
Pathway
pelg02024  Quorum sensing
pelg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pelg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACJ7K1_13940 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ACJ7K1_13940 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pelg03019]
    ACJ7K1_13940 (hfq)
   03036 Chromosome and associated proteins [BR:pelg03036]
    ACJ7K1_13940 (hfq)
Messenger RNA biogenesis [BR:pelg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ACJ7K1_13940 (hfq)
Chromosome and associated proteins [BR:pelg03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ACJ7K1_13940 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: XOK64159
LinkDB
Position
3082742..3082981
AA seq 79 aa
MNKSINIQDTFLNQLRKENIPVTVYLTNGFQIRGVIRAFDNFTIIIDSEGRQQMVYKHAI
STFTPQRSVSLMQQENSTE
NT seq 240 nt   +upstreamnt  +downstreamnt
atgaacaagtcaatcaacattcaggacacgtttttaaaccaattgcgcaaggagaacatt
ccggtcaccgtttatttgaccaatggatttcaaattcgcggcgtcattcgcgcgttcgat
aactttacgatcattatcgacagcgaaggacgccagcaaatggtgtataagcatgcgatt
tcgacctttacgccgcagcgttcggtgtcgctcatgcagcaggaaaatagcaccgaatag

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