Paenibacillus elgii: ACJ7K1_24200
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Entry
ACJ7K1_24200 CDS
T11011
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pelg Paenibacillus elgii
Brite
KEGG Orthology (KO) [BR:
pelg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pelg03016
]
ACJ7K1_24200
Enzymes [BR:
pelg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACJ7K1_24200
Transfer RNA biogenesis [BR:
pelg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACJ7K1_24200
Prokaryotic type
tRNA splicing ligases
ACJ7K1_24200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XOK59643
LinkDB
All DBs
Position
complement(5433191..5434417)
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AA seq
408 aa
AA seq
DB search
MAYQIIDGVRVWGNPEAGALAQAKTCAEHGNVVQALLMADHHKGYSQPIGGVIVYEGQIS
PSGVGYDIGCGNKAVRTNLLAADIRPRLARIMDDIARNVSFGIGRVSNKKVDHELFDDPD
WSVYSSVGRREHRKLKALARDQLGTVGSGNHFVDLFEEAGTGRLWIGNHFGSRGFGHKTA
SGFINLAAGREFLANAPGEKMDQPPVLLDLDSELGDMYYRAMKLAGRYAYAGRDAVIRQV
LAILGADAEFEVHNHHNYAWKETHGGRETVVVRKGATPSAPGQLGFIGGSMGDISVIVRG
KDTEENRAAFYSTVHGAGRIMSRTQAAGKMNWKTRTRSGGLISETQMHEAVKSFGVELRG
AGTDESPFVYRKLQEVLDAHAETIEVLHVLKPIGVCMAGADEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcttatcaaatcatagacggcgtccgcgtctgggggaacccggaggcaggcgccttg
gcgcaagcgaaaacgtgcgcggagcacggaaatgtcgtgcaggcgctattgatggcggac
caccacaagggctacagccagccgattggcggggtgatcgtctacgaaggacaaatctcg
ccgtccggcgttgggtacgacatcggatgcgggaacaaagcggtgcgaacgaacctgctg
gctgcggatatccggcccaggctggcgcgcatcatggacgacatcgcacggaacgtttcg
ttcggcatcgggcgtgtaagcaacaagaaggtggatcacgagctgttcgacgatccggat
tggtcggtgtattcgtcggtcgggcgtcgggagcaccgcaagctgaaggcgcttgcccgc
gatcaattgggaaccgtaggcagcgggaatcatttcgtcgatttgttcgaggaagcgggg
acagggcggctgtggatcggcaatcacttcggcagccgcgggttcggccataagacggcc
agcggctttattaaccttgcggcgggcagggagtttttggcgaacgctccgggggaaaag
atggaccagccgccggtgctgctcgatttggacagcgagcttggcgatatgtattaccgc
gccatgaagctggccgggcggtacgcgtatgccggaagagatgccgtcatccgtcaggtg
ctggcgattttgggagcggacgcggaattcgaggtacataaccaccacaattatgcgtgg
aaagagacccatggcggccgggaaacggtcgtcgtgcgcaaaggggcgacgccgtccgct
cccggccagcttggattcatcggcggcagtatgggcgacatctcggtcattgtccggggg
aaggatacggaggaaaaccgggcggccttctacagcacggtgcacggcgcgggaagaatc
atgagccgcacgcaggcggccggcaaaatgaactggaagacgcgcacccgctcgggcggc
ctcatctcggagacgcagatgcacgaggccgtgaagagcttcggcgtcgagcttcgcgga
gccgggacggacgaaagcccgttcgtgtaccggaagcttcaggaggtgctggacgcccac
gcggaaacgatcgaggtgctgcatgtgctgaagccgatcggcgtatgcatggccggtgct
gacgagttcgatccgtataaggactag
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