Paenibacillus elgii: ACJ7K1_34235
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Entry
ACJ7K1_34235 CDS
T11011
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pelg Paenibacillus elgii
Pathway
pelg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pelg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACJ7K1_34235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pelg03021
]
ACJ7K1_34235 (rpoC)
03400 DNA repair and recombination proteins [BR:
pelg03400
]
ACJ7K1_34235 (rpoC)
Enzymes [BR:
pelg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACJ7K1_34235 (rpoC)
Transcription machinery [BR:
pelg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACJ7K1_34235 (rpoC)
DNA repair and recombination proteins [BR:
pelg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACJ7K1_34235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XOK61457
LinkDB
All DBs
Position
7527263..7530883
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFQAGMGAEAVKKLLQ
DIDIEKEVDMLKEELKTAQGQRRNRAIKRLEVMEAFRNSKNMPEWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARVLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTTENKHAKGSMTILRTVAEAVSLYHRGDASLHARVAIP
AKALGKTSFTPEQQEAMLITTIGKIIFNEIYPTDFPYINEATKANLLNGPSDNYFVFEKG
GDIRTKMEELPETKAVGKDYLGTIIAECFRRYHTTQTSVTLDNIKQLGFTYSTRAGITIA
VADVTVPQEKDEILQESDEKVKVVTNQYRRGLITDDERYERVIAIWSKAKDEITDILMKS
LDKYNSINMMVESKARGNKSQITQLGGMRGLMATPTGRIYELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRDEDCGTDKGFLVSRIQDGKEVIEDL
YDRIEGRYSFETIRDPKTGEVIVSRNDLIDAGKADRIIDAGIEKVQIRSVLSCRSRHGVC
KKCYGRNLATGQHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIREAKDRREIEVQGEAESKVYSISYGSRIRVSVNQTVEA
GDELTEGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGNTTLLPGSFVDIHEYEEANKVALFAGEEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMSRYRNIRITDPNAVPLDEEMTEA
EGVTVE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtcaacaattttgagtacatgaaaatcggattggcttcccccgacaagata
cgttcgtggtccagaggcgaagtaaagaagccggaaacgatcaactatagaacgttgaag
ccggaaaaggaaggcttgttctgcgagaaaatcttcgggccgaccaaagactgggaatgt
cattgcggtaaatataaacgcgtccgttacaaaggcgtcgtctgtgaccgatgcggcgta
gaggttactcgccaaaaagtgcgccgtgaacgtatgggtcatatcgaactggctgctccg
gtttcacatatttggtacttcaaaggcattccgagccgcatggggcttgcgcttgacatg
tctccccgttcgctggaggagatcatctatttcgcatcctatgtcgtaacggatccggga
gacacgccgctggagaaaaaacagctgctctccgagaaggaataccgcagctatcgcgaa
aagtacggctatgcgttccaagccggcatgggtgccgaagcggtgaagaagcttctgcag
gatatcgacatcgagaaagaagtcgatatgctgaaggaagagctgaaaaccgcacagggt
caacgccgcaaccgcgcaatcaagcggctcgaagtcatggaagctttccgtaactcgaaa
aatatgccggagtggatggtgctggacgtgctgccggtcattcctccggagctccgtccg
atggtacagctggacggcggacgtttcgcgacctccgacttgaacgacttgtaccgccgg
gtcattaaccggaacaaccgtctgaaaagactgcttgacttgggcgcacccgatattatc
gtgcagaacgagaaacggatgctgcaggaagccgttgacgccttgatcgataacggccgc
cgcggccgtccggtaacgggtccgggcaaccgtccgctcaaatcgctcagccatatgctg
aaagggaagcaaggtcgtttccgtcaaaacctgctcggtaaacgggttgactattccggc
cgttccgttatcgttgtcgggccgagcctgaagatgtaccaatgcgggctcccgaaagaa
atggcgctcgagctgtttaagcctttcgtcatgaaggagcttgtcaataaaggtcttgcg
cacaacatcaagagtgcgaagcgcaaagtagaacgcgttagcccggaagtatgggacgtg
ctcgaagaagtgatcaaagagcatccggtcctgcttaaccgcgcccccacgcttcaccgt
ctcgggattcaggcgttcgagccaatcctggtcgaagggcgcgcgatcaagctgcatccg
ctcgtatgtacggcttataacgccgactttgacggtgaccagatggccgttcacgtgccg
ttatccgcagaagcgcaagcggaagctcgcgtcttgatgctggcttcggggaacatcttg
aacccgaaagacggcaagcctgtcgttacgccttcgcaggatatggttctcgggagcttc
tacttgacgaccgagaataaacacgcaaaaggttcgatgacgattcttcgtaccgttgcc
gaggccgtgtctctgtatcatcgcggagacgcttcgcttcatgcccgcgtagctattccg
gccaaagcgctcgggaaaacgagctttacgccggagcagcaagaagcgatgcttattaca
acgatcggaaaaatcatctttaacgagatttatcctacggacttcccgtacatcaacgaa
gcgaccaaagcgaacttgttgaacggaccgtcggataactacttcgtattcgaaaaaggc
ggagatatccgcacgaagatggaggagctgccggagacgaaggccgtaggtaaagactac
ctgggtacgatcatcgccgaatgcttccgccgttaccatacgacgcaaacgtcggtgacg
ctggataacattaagcagcttggatttacctactccacacgggcggggatcacgatcgct
gtggcggacgttaccgttccacaggagaaggatgaaattcttcaagagtccgacgagaaa
gtcaaggtcgtgacaaaccaataccgtcgtggtctgattacggacgacgagcggtatgaa
cgcgtcattgcgatctggagtaaggcgaaggatgaaattaccgacattttgatgaagtcg
cttgataaatacaactccatcaacatgatggtcgagtccaaggcgcgcggtaacaaatcg
cagatcacccagcttggcgggatgcgcggtctgatggcgacgccgacaggccggatctac
gaattgccgatcaaatcgaacttccgcgaaggcctgacggtcttggagtactttatctcc
acgcacggcgcgcggaaaggtttggccgatacggcgcttcgtaccgccgactccggttac
ctgacccgccgtcttgtcgacgtagcgcaggacgtcatcgtacgcgacgaggattgcggt
acggacaaaggcttcttggtgagccgtattcaggacggtaaagaggttattgaggatctg
tacgaccggatcgaaggccgttattccttcgaaacgatccgcgatccgaagaccggtgaa
gtcattgtttcccgcaacgatctgattgatgcaggaaaagccgaccggattattgatgcc
ggcattgagaaagtacagattcgttccgtacttagctgccgctccagacacggcgtatgt
aaaaaatgttatggacgtaacttggctacaggccaacacgtcgagatcggtgaagccgta
ggcattatcgcggcgcaatccatcggggaaccgggaacgcagctgacgatgcgtacgttc
cataccgggggcgttgcgggcgacgatattacccaaggtttgccgcggattcaggagctt
ttcgaagcgcggaatccgaaagggcaagcgacgatttccgagatcgacggcgtggtaaaa
gaaattcgcgaagccaaagaccgccgggaaatcgaggtccaaggcgaagcggaatccaag
gtgtactccatctcttacggttcccgtatccgggtctccgtcaaccagactgtagaggct
ggcgacgagctgaccgagggttcgatcgacccgaaagaaatgctgcgcatcaaagggatc
cgcggcgtgcagaactatattttgcaagaggttcagcgcgtataccggaaccaaggggta
gaaatcaacgacaagcacgttgaggttatgatccgccagatgctgcgtaaaatccgtatc
gtcgatgcgggcaatacgacgctgcttccgggatcgttcgtggatatccacgaatacgag
gaagcgaacaaagtggctctcttcgcgggcgaagagcctgcagttgcgaagccggtgctc
ctcgggatcaccaaggcgtcgctggagaccgattcgttcctgtctgcggcatcgttccag
gaaaccacccgggttcttaccgatgcggcgattaaaggcaaagtcgaccaactgctcggc
ttgaaagagaatgtcatcatcgggaagctgattccggccggtacggggatgtcgagatac
cgcaacatccgtatcaccgacccgaacgccgttccgctggatgaagaaatgaccgaggcg
gaaggcgtaacggtagaatag
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integrated database retrieval system
