Pelagibacterium flavum: OF122_03415
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Entry
OF122_03415 CDS
T08676
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OF122_03415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pem03019
]
OF122_03415
03009 Ribosome biogenesis [BR:
pem03009
]
OF122_03415
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OF122_03415
Messenger RNA biogenesis [BR:
pem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OF122_03415
Ribosome biogenesis [BR:
pem03009
]
Prokaryotic type
rRNA helicases
OF122_03415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UYQ72842
LinkDB
All DBs
Position
complement(665903..667765)
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AA seq
620 aa
AA seq
DB search
MSSDTDHAPADLPASIHVALASALAAHGYTQLTPVQTAMLDPAHDEADLLVSAQTGSGKT
VAFGIAIASTLLGDAERFGAAQTPLGLVIAPTRELALQVQRELAWLYADAGIRIATCVGG
MDMRDERRALDRGAHLVVGTPGRLRDHITKRSLDLSDVRAVVLDEADEMLDLGFRDDLEF
ILAASPEERRTLLFSATVPRAIADLAKTYQRDAVRVATTAATEQHADIDYQLMVVHRDER
EHAIINTLLTSDSTSALVFCHTREAVRHLAARLTNRGFAAVALSGELAQSERSSALQAMR
DGRAHVCVATDVAARGIDLPNLDLVIHADIPSNPATLLHRSGRTGRAGRKGVCVLVVAEH
RRKAAARVLAMAKLSATTVSAPTIADIEARYRRQILDAAVSAPMPEEHENEFVAELLGKV
SPEQLAVAFLRQQLASRPVPEETSSVSLAGDGPKSKRRDKRAEGGPAYDPMAPREPRGPD
MVGGVWFTLSLGRKHRADPKWLLPMICKAGGVTKREVGSIKIDDTETRFEIAAEKADDFA
QQIRRTGSLERGVTIAPAGRGPSKPPRAREGYEPKPKFDARPKSEPKAKFKPRPKREAGP
GDAPRPAKTGSKGFGKKGRK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgatactgaccacgcgccggcggacctgccggcatcaatccacgttgcgctg
gcgagcgcccttgccgcccatggctatacccagctcacgcccgtgcagacggcgatgctc
gatcccgctcatgacgaagcagacctgctggtttcggcccagaccggctcgggcaagacc
gtggcattcggcatagcgattgcctccacgcttctgggcgatgccgagcggttcggcgcc
gcgcaaaccccgttggggctggtgatcgcaccgacccgggagctggcactgcaggtgcag
cgcgagctcgcctggctgtatgccgatgccggcatccgcatcgccacctgcgtcggcggc
atggacatgcgcgacgagcgccgtgcactcgaccgtggtgcccatctggtggtgggcacg
ccggggcgactgcgtgatcacatcaccaagcgctccctcgacctcagtgatgtgcgcgcc
gtagtgctcgacgaggccgacgaaatgctcgatctgggctttcgcgacgatctcgaattc
atcctggccgcctcgccagaagaacgccgcaccctgctgttttcggccactgtgccccgt
gccatcgccgatctggccaagacctatcagcgcgacgctgtccgggtggcgacaacggca
gcgaccgaacagcacgccgatatcgactaccagctcatggtggtccaccgcgacgagcgc
gaacacgccatcatcaataccctgctcacgtccgacagtaccagcgccctggtgttttgc
cacacccgcgaggcggtgcgccatcttgcggcgcgactgaccaatcgcggttttgcggcc
gtggcgctgtcgggcgagttggcccagtccgaacgctcgagcgccctgcaggccatgcgc
gacggacgcgcccatgtttgcgtcgctaccgatgttgcagcgcgcggcatcgacctgccc
aatctcgacctcgtgattcacgccgatatcccttcaaaccccgcgacgttgctgcaccgg
tctggtcgcaccggacgagctggacgcaagggcgtttgcgtgcttgtcgtcgccgaacac
cggcgcaaggcggcagcccgcgtcctggccatggccaagctttcagcgaccaccgtctcc
gcgccgaccatcgccgatatcgaagcacgctatcgccgccagatccttgacgccgcggtc
tccgcccctatgcccgaggagcatgaaaacgaattcgtggccgagctcttgggcaaggtt
tcgcccgagcaactggccgtcgccttcctgcgccagcaattggccagccggccggtgccc
gaagagacctcttcggtgtccctggcgggcgacggccccaaatccaagcggcgcgacaag
cgggccgaaggtggaccggcatacgatcccatggccccgcgcgaaccgcgcggacccgac
atggtgggcggagtttggttcaccctttcgctgggccgcaagcaccgggccgatcccaaa
tggctcttgcccatgatctgcaaagcgggcggggtaaccaagcgcgaagtgggctcgatc
aagatcgacgacaccgaaacgcgcttcgagatcgccgccgaaaaggccgatgactttgcc
cagcagatccggcgcaccggcagcctggaacgcggcgttaccatcgccccggccggccgc
ggtccttcaaagccgccccgcgccagggaagggtatgagccaaaacccaaattcgatgcc
aggccaaaatccgagccgaaggccaaattcaagccccgtcccaagcgtgaagccggcccc
ggcgacgcgccgcgcccggccaagaccggatcaaaagggttcggcaagaaggggcgcaaa
tag
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