Pelagibacterium flavum: OF122_04255
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Entry
OF122_04255 CDS
T08676
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pem01002
]
OF122_04255
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pem01011
]
OF122_04255
Peptidases and inhibitors [BR:
pem01002
]
Cysteine peptidases
Family C82
OF122_04255
Peptidoglycan biosynthesis and degradation proteins [BR:
pem01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
OF122_04255
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
UYQ72987
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Position
complement(851196..852854)
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AA seq
552 aa
AA seq
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MKTLNSGLKALLLGAFTGISLLGFSATATAFETVMVDGVQATRIMIAPPRNTLEQTIRDG
LRDAMTQAPSGRAADDASRLYYFYGSRHFEPLWLTQTDDGIVFSGAAKQILAVFEDAYLQ
GLDPADYMIDMAALEAAAGDPAALASLEAAFSAAILHYANNAHTGRLDPRSVSGYIDLAP
KSVDEAELFSAVAQASDPAAVLLSYHPTHREFVALRDLLASHYAGDIEDLPPIADGKLIK
LGMTDPRVPVLRERLGLGAAQTEPLVYDAELAGAVEAFQTTIGLTPDGVVGPATIAAING
ANGATRADIVANMERWRWMPEDLGDFNVFVNIPEFRLDVNREGRSVWDTRIIVGTAKNQT
PLFSDMIRHVVTNPYWNVPSSILTAEIFPQVARNPNYIASQNMELIYQGKAIDPWMVDWS
RASPSMFRVRQKPGTSNALGQVKFLFPNSHDVYLHDTNARYLFDRSMRALSHGCVRVQDP
FGFAEALLQHEPSLTVASLEGTLGGSERWFNMDRQVPVHLAYFTLRIDTDGTVRSFGDLY
GHNAKVIEMLGL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaagactttgaactccgggctcaaagcgctccttctgggcgctttcacgggcatttca
cttttgggtttcagcgcgacggccaccgcgttcgagacggtgatggtcgatggcgtccaa
gcgacgcgaatcatgattgcgcccccgcgcaatacgcttgagcagacaattcgcgatggc
ctgcgcgacgccatgacccaggcgccctcaggccgcgccgccgacgatgcgtcccggctt
tactacttttacggctcgcgccatttcgagccgctctggctgacccaaaccgatgacggc
atcgttttctcgggcgccgcaaaacagatattggccgttttcgaggacgcctacctccaa
ggcctcgacccggccgactatatgatcgatatggcagcacttgaagcggcggccggcgat
ccggcggcgctggcgtcgcttgaggcggcgttttcagccgccattctccactacgcaaac
aatgcccataccggtcggctcgatccgcgatcggtttcgggctatatcgaccttgctccc
aagagcgttgacgaggccgaactgttttcggcggtagcccaggcgtccgacccggccgct
gtccttttgagctatcacccgacccatcgcgaatttgtcgctctgcgcgatctgctggcc
agccattacgccggtgacatcgaggacctcccccccatcgccgatggcaagctcatcaag
ctgggcatgaccgacccgcgcgttcccgtgctgcgtgagcgtctcgggcttggcgccgca
caaaccgagcctctcgtttacgatgccgaacttgccggcgccgtggaggctttccagacc
acgatcgggctcacccccgatggcgtggtcggcccggcgaccattgccgccatcaacggc
gcaaacggcgccacccgtgccgatatcgtcgccaacatggaacgctggcgctggatgccc
gaggacctcggagatttcaacgtcttcgtcaacattcccgagttccgcctggacgtgaac
agggagggacgctcggtctgggacacgcgcatcatcgtgggcacggccaagaaccagacg
ccgctgttttccgacatgatccgccacgtcgtcaccaacccttactggaacgtgccgtcc
tcgatcctcacggcagaaatctttccccaggtggcgcgcaatcccaactatatcgccagc
cagaacatggaactgatctatcagggcaaggccatcgacccctggatggtcgactggtcg
cgcgccagcccctccatgttccgtgtgcgccagaaaccgggcacatccaatgctttggga
caggtgaaattcctgttccccaattcccatgatgtctatctgcacgacaccaacgcccgt
taccttttcgaccgctccatgcgggcgctcagccatggatgcgtgcgcgttcaggacccg
ttcggttttgccgaagccctgctccagcatgagcccagcctcacggtggcctcgctcgaa
ggcacgctcggcggcagcgagcgctggttcaacatggaccgacaggtgcccgtgcatctg
gcctatttcaccctgcggatcgataccgatggcaccgtgcgctcgtttggcgatctttac
gggcacaacgcaaaagtcatcgaaatgctggggctttaa
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