Pelagibacterium flavum: OF122_04490
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Entry
OF122_04490 CDS
T08676
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OF122_04490 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_04490 (ruvB)
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF122_04490 (ruvB)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OF122_04490 (ruvB)
RecFOR pathway proteins
OF122_04490 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
TIP49
Mg_chelatase
AAA_16
AAA_22
AAA_3
AAA_18
nSTAND3
AAA_14
Rad17
AAA_2
AAA_17
NTPase_1
RNA_helicase
TsaE
ABC_tran
AAA_33
NB-ARC
AAA_24
AAA_28
NACHT
Sigma54_activ_2
AAA_7
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UYQ73030
LinkDB
All DBs
Position
894216..895259
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AA seq
347 aa
AA seq
DB search
MTDLTNAAEGRDDSLDVSLRPSGFSEFIGQEAARANLQVFIEAARQRQAALDHVLFVGPP
GLGKTTLAQIISRELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEE
ILYPAMEDFQLDLIIGEGPVARSVRIDLAKFTLVGATTRAGLLTTPLRDRFGIPVRLNFY
TPEELVQIVERGARLMGMAMTSDGALEVARRSRGTPRIAGRLLRRVTDFALVEGAAEINR
KVADKALLRLDVDARGLDQLDRRYLKTIAEFYGGGPVGIETISAALSEPRDAIEEIVEPY
LIQQGFIQRTPRGRMMTALSFQHMGYAVPQGFAGLQASLFEDEGEAE
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctcaccaatgctgccgaaggccgcgacgacagtctcgatgtttccctgcgc
ccctcgggtttttccgagttcatcgggcaggaggcggcgcgcgccaatcttcaggtgttt
atcgaagcggcgcggcagcgccaggcggcgctcgatcatgtgttgttcgtcggcccgcca
gggctgggcaagaccacgctcgcccagatcatttcgcgcgagcttggcgtgggctttcgg
gccacgtccggcccggtcatcgccaaggcgggggatctggccgcgcttttgaccaatctc
gaagagcgcgatgtgttgttcatcgacgaaatccaccgtctcaatccggcggtcgaggaa
attctctatcccgcgatggaggatttccagctcgatctgattatcggggagggcccggtg
gcgcgttcggtgcgcatcgatctggccaagttcacccttgtgggcgccaccacccgcgcc
gggttgttgaccacgcctttgcgcgatcggttcggcattccggtgcgattgaacttttat
acccctgaggaactggtccagatcgttgagcgcggcgcgcggctgatgggcatggccatg
acctcggacggcgctctggaagtggcgcgacgttcgcgcggcacaccgcgcatcgcgggg
cggctcttgcgccgggtcaccgatttcgcgcttgtcgaaggcgctgccgagatcaaccgc
aaagtcgccgacaaggcgctgttgcggctcgatgtcgatgccaggggactcgaccagctc
gatcggcgctatctcaagaccattgccgaattttatggtggggggccggtgggcatcgaa
accatttccgccgcgctgtccgaaccgcgcgatgccatcgaggaaatcgttgagccttat
ctcatccagcaggggttcattcagcgcacgccgcgcggacggatgatgacggcgctgtcg
ttccagcacatgggctatgcggtgccgcagggttttgccggcttgcaggcgagcctgttc
gaggatgagggagaggccgagtga
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