Pelagibacterium flavum: OF122_04675
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Entry
OF122_04675 CDS
T08676
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pem03021
]
OF122_04675 (rpoH)
Transcription machinery [BR:
pem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OF122_04675 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_11
GST_C_7
Motif
Other DBs
NCBI-ProteinID:
UYQ73064
LinkDB
All DBs
Position
complement(935911..936789)
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AA seq
292 aa
AA seq
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MAQSNLPVLSSESGLNRYLQEIRKFPMLDPDEEFMLAKRYKEHSDPQAAQKLITSHLRLV
AKIAMGYRGYGLPISEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIRASIQEYVLRSW
SLVKIGTTAAQKRLFFNLRRLKGQIAALEDGNLHPDQIKQIATTLNVTEDDVVSMNQRLT
GDASLNAPMRADEGTSQWQDWLIDDVPDQEEVLGQSQEYDERMGLLEGAMEVLNDREKAI
FKARRLQESPSTLEELAQEYDVSRERIRQIEVRAFEKVQDAVKEAARTQAAH
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcccaatccaatcttcctgtgcttagctcggaaagcgggctcaatcgctatttgcag
gaaatccgcaagtttccaatgctcgaccctgacgaggaatttatgctcgccaagcggtac
aaggagcattccgatccccaggcggcccagaaactcatcacgtcccatttgcgcctcgtg
gccaagattgccatgggctatcgcggctatggcctgcccatttccgaggtgatctcggaa
ggcaatgtcggcctcatgcaggcggtcaaacgcttcgagcccgataagggcttccgtctt
gccacctatgccatgtggtggattcgcgcctcgatccaggaatacgtccttcgctcctgg
tcgctggtcaagatcggcacgacagccgcccagaagcgtctgttcttcaacctgcgccgg
ctgaaaggccagatcgcagcgctcgaggacggcaaccttcatcccgaccagatcaagcaa
atcgccacgaccctcaacgtgaccgaggatgacgtggtctcgatgaaccagcgcctgacc
ggcgatgcctcgctcaacgcgcccatgcgcgcggacgaaggcaccagccaatggcaggac
tggctgatcgacgatgtgcccgatcaggaagaagttctcggccagagccaggaatatgac
gagcgcatgggcctcctcgaaggcgccatggaagtcctcaacgaccgtgaaaaggccatc
ttcaaggcccgccgcctgcaggaaagcccgtcgaccctcgaggagctggctcaggaatac
gacgtctctcgcgagcgtatccgccagatcgaggttcgcgcttttgaaaaagtacaggac
gccgtcaaggaggccgccagaacgcaggcggcccattga
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