Pelagibacterium flavum: OF122_06475
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Entry
OF122_06475 CDS
T08676
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03420
Nucleotide excision repair
pem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OF122_06475
03430 Mismatch repair
OF122_06475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_06475
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF122_06475
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OF122_06475
MMR (mismatch excision repair)
Other MMR factors
OF122_06475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
AAA_30
DEAD
Zeta_toxin
ResIII
nSTAND3
AAA_11
AAA_16
AAA_25
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
UYQ73401
LinkDB
All DBs
Position
complement(1306372..1308195)
Genome browser
AA seq
607 aa
AA seq
DB search
MVDLTPAQKDVLKEDGHQLVVGGPGSGKTTVSILKAAKIAREKLRPGQRILFLSFARATV
SRVFEAIDEEQSVMKEDKERIEVDTYHSFFWRILKAHGYLVGFPRRMAILTPPNEAIALS
AIRSGFKAPSKLSDEEKAQKAALEVAERMRLATEEGKICFDLFAERVATLLHGSTKVRDL
VSTMYPSIILDEFQDTSAQQWRAVEAVGKSSTLIALADPEQRIFDFIGADPERLDHFRKA
FKPSEHDLAGDNHRSKGTDIALFGNHLLTGKFREEAYQGIDYEGFASNPNQAFASLVAQV
LKARKRLVATARRDWSLAILVPTKRMTRLVSDNLRAPFGNVPPIAHTAAVDMEGPILASE
VIAFLLQQRSHVGCFDEFVDVLCSYFSGRGGHAPTKGDLAEAARFRSALSRWNDCLAKGK
AVPANSVLQATFAVHEAATAVALSGRPDHDWTAVRAVLEAGACTRLGEVAKEARNVRLLE
RGTQLRQSLSQDWRDTGGYKNALAVTRQAFVQEHFATAHKPESGVVVMNMHKAKGKQFDE
VIIFEGWPKRYKGEIVGNPDRIVGGNVRAGAMTQARQNFRVSVTRAKTRTTIMSPNDDVC
VLLIPDK
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggtcgatctgacacccgcgcaaaaggatgttctaaaggaagatgggcaccagctcgtc
gtaggtgggcctggctcaggcaagactacagtgtccatcttgaaggcagcaaagatcgcc
cgcgagaagctgaggccggggcagcgcatcctattcctgagctttgcgcgcgcgacggtc
tcgcgcgttttcgaagcgattgacgaagagcagtcggtcatgaaggaagacaaggagcgg
atcgaggtcgatacctatcactccttcttctggcgcattctcaaggcgcacggctatctg
gtcgggtttcctcgccgcatggcgatcctgacgcctcccaatgaagcgattgcgctttca
gcgatccgcagcggcttcaaggcgccctccaagctgtcagatgaggagaaggcgcagaag
gccgcgctggaggttgccgagcggatgcggctggcgaccgaggaaggcaagatctgcttc
gatctgttcgccgagcgcgtggccactttgctgcatggttccaccaaggtccgcgatctc
gtgtcgaccatgtacccgtccatcattctcgacgagtttcaagataccagcgcccagcag
tggcgcgcggtcgaggcggtaggcaagagcagcacactgatcgcgctagccgaccctgag
cagcgcatctttgatttcatcggcgccgatcccgagcgcctcgatcacttcaggaaggcg
ttcaagccctccgagcatgatctggccggggacaatcaccgcagcaaggggaccgacatc
gcactgttcggaaaccaccttcttaccggcaaatttcgggaagaagcgtatcagggcata
gactacgagggatttgcctcgaatcctaatcaagccttcgcctcgcttgtcgctcaggtt
ctgaaagctcgtaagcggctagtcgcgacggcccgccgagattggtcgcttgcgattctg
gtgccgaccaagcgtatgacccggctggtctccgacaatttgcgcgcgcccttcggcaac
gtgcctccgatcgcacacactgcagccgtcgacatggaaggcccgatcctggcgtccgag
gtgattgccttccttctccagcagcgaagtcacgtcggttgctttgacgaattcgtcgac
gtgctttgcagttatttcagcggccgagggggtcatgcaccgaccaagggcgatctggcg
gaagcggcgcggttccgctcggcgctgagcaggtggaatgactgccttgcgaaggggaag
gccgttccggcgaacagcgtcctgcaagccacgttcgcggtccacgaggctgcaacggct
gttgcgctgtccggccggcctgaccacgattggaccgccgttcgagcggtgcttgaagct
ggtgcttgcactcggctcggcgaggttgcgaaggaggcgcgcaacgtccggcttctcgaa
cgcggaacgcagctccggcaaagcctatcgcaggactggcgcgatacgggcggatacaag
aacgcgctcgctgtcactcgtcaagcgttcgtgcaggagcattttgcgaccgctcacaaa
ccggagtcgggtgtcgtcgtgatgaatatgcacaaggcgaaggggaagcaattcgatgag
gtcatcatcttcgaaggatggccgaagcgctataagggcgagatcgtcggcaacccggat
cgcattgtgggcggcaatgtccgcgcgggcgcgatgacgcaagctcgccagaatttccgc
gtgagcgtaacgcgcgcgaaaacccgcacgacgatcatgtcgcctaacgacgacgtgtgc
gtcctgctgatccccgacaaatag
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