Pelagibacterium flavum: OF122_07805
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Entry
OF122_07805 CDS
T08676
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03420
Nucleotide excision repair
pem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OF122_07805
03430 Mismatch repair
OF122_07805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_07805
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF122_07805
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OF122_07805
MMR (mismatch excision repair)
Other MMR factors
OF122_07805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
AAA_11
PcrA_UvrD_tudor
DEAD
DUF3553
ResIII
Motif
Other DBs
NCBI-ProteinID:
UYQ74085
LinkDB
All DBs
Position
complement(1575842..1578166)
Genome browser
AA seq
774 aa
AA seq
DB search
MSAVPPHRPQGPITSQFAAREPAYLAGLNAEQREAVETTEGPLLVLAGAGTGKTRVLTTR
IAHILATRKARGNQILAVTFTNKAAREMKERIGKLVGASVEGMPWLGTFHSIGARLIRRH
AELVGLRPDFTILDTDDQIRLIKQLLAAENIDEKRWPARQFASMMDGWKNRGLLPKDISP
ADAGFFANGKGQNIYKDYQARLKTLNAADFGDLLLEGIRLFKENPEILAQYHDRFRYMLV
DEYQDSNTAQYMWLRLLAQSRDGINSSNICVVGDDDQSIYGWRGAEVDNILRFEKDFPGA
KIIKLERNYRSTSNILSAASHLIANNESRLGKTLQTDVGEEGEKLSVTSVWDSEEEARQI
GEEIEQYQRQGDPLDDMAILVRASFQMREFEERFITLGLNYRVIGGPRFYERKEIRDALA
YLRIVAQPADDLALERIVNVPKRGLGDATLQIVHDTARAAQIPLLTAIRELTETEELKPK
QRSTFRELVRQIDDWADRLRTIPHHELAEQILDESGYTAMWQNDKSADAPGRLENLKELI
RSMEEFENLGGFLEHIALVMDRDSGEGGDAVSIMTLHSAKGLEFNTVFLPGWEEGLFPHQ
RALDESGLAGLEEERRLAYVGITRARKRCRISLAQNRRIHGLWQSAIPSRFLDELPAQVV
EVTDTGSSYGGYTYGGRATTRFDNRDPFESVYETPGWQRAQRQQSSRKGPGPVTIDGDLV
ARSSGPSAAYGVGERVFHLKFGYGTVTAAEGNKLSIDFEKAGPKKVLDSFVKRG
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgtcccgccccatcgcccgcaaggccccatcacctcccagttcgctgcgcgt
gagccggcctaccttgccgggctcaacgccgaacagcgcgaggcggtggaaacgaccgaa
ggccccctcctggtccttgccggcgccgggacgggcaaaacccgcgtcctgaccacccgc
atcgcccacatccttgccacccgcaaagcccggggcaaccagatcctcgccgtcaccttc
accaacaaggcggcgcgcgagatgaaggagcgcatcggcaagctcgtcggtgcctcggtc
gaaggcatgccctggctgggcaccttccactccatcggcgctcgcctgatccgccgccat
gccgagctggtcggcctgcgccccgatttcacgattctggacactgacgaccagatccgt
ctcatcaagcaattgctcgccgccgaaaacatcgatgaaaagcgctggcccgcccgccag
ttcgcctcgatgatggatggctggaaaaaccgtggcctgctccccaaggacatctccccc
gccgatgccgggttctttgccaatggcaagggccagaatatctacaaggactatcaggcg
cggctgaaaacattaaacgccgccgatttcggcgatctcctgctcgaaggcattcgcctg
ttcaaggaaaaccccgaaattctcgcccaatatcacgaccgcttccgctacatgctggtc
gacgaataccaggacagtaacaccgcccaatacatgtggctccgcctcctcgcccagtcc
cgcgacggcatcaacagctcgaacatctgtgtggtcggcgatgacgaccagtcgatctat
ggctggcgcggcgccgaggtcgataacatcctgcgcttcgaaaaggacttccccggcgca
aagatcatcaagctcgaacgcaactaccgctccacctccaacatcctctccgccgcctcc
cacctgatcgccaacaacgagtcccgcttgggcaagacgctccagaccgatgttggcgaa
gaaggtgagaaactctcggtaacctcagtctgggactccgaagaagaggctcgccagatc
ggcgaagagatcgaacaataccagcgccagggcgacccgctcgacgacatggccatcctc
gtgcgcgcctcgttccagatgcgcgaattcgaagaacgcttcatcactttggggttgaac
taccgcgttatcggcggcccgcgcttttacgagcgcaaggaaatccgcgacgcgctggca
tacttgcgcatcgtcgcccagcccgccgacgatcttgccctcgaacgcatcgtcaatgtg
cccaagcgcggccttggtgatgccaccctgcagatcgtccatgacactgcccgcgccgcc
caaatcccgctgctgacagccatccgcgagctgaccgaaaccgaggaattaaagcccaaa
cagcgttcgacctttcgtgaactggtccgccagatcgacgattgggccgatcgtctccgc
accatcccccaccatgagctggccgaacagattctcgatgaatccggctacaccgccatg
tggcagaacgacaaatccgccgacgcccccggacggctggaaaacctcaaggaactcatc
cgctccatggaagagttcgaaaaccttggcggtttcctcgaacacatcgctctggtcatg
gaccgcgattccggcgagggtggcgacgcggtctcgatcatgactctgcactcggccaag
ggcctcgaattcaacaccgtcttcctccccggctgggaagaaggcctgttccctcatcag
cgcgctctcgatgaatccggcctcgccggtctcgaggaagaacggcgtctggcctatgtc
ggcatcacccgcgcccgaaaacgctgccgcatttccctcgcccagaaccgccgcatccac
gggctctggcaatccgccatcccctcgcgcttcctcgacgaactccccgcccaggtcgtc
gaagtcaccgacaccggctcctcttacggcggctacacctatggcggccgcgccaccacc
cggttcgacaaccgcgaccccttcgaatccgtctatgaaacccccggctggcaacgcgcc
cagcgccagcaatcgtcccgcaagggcccaggccctgtcaccatagacggcgacctcgtc
gcccgctcctcaggcccctcggccgcctacggcgtcggcgaacgcgtcttccacctcaaa
ttcggctacggcacggtgaccgccgctgaaggtaacaagctctcgattgattttgagaag
gccgggcccaagaaggtgctggatagttttgtgaagcgggggtga
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