Pelagibacterium flavum: OF122_09290
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Entry
OF122_09290 CDS
T08676
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OF122_09290 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pem03021
]
OF122_09290 (rpoC)
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_09290 (rpoC)
Enzymes [BR:
pem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OF122_09290 (rpoC)
Transcription machinery [BR:
pem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OF122_09290 (rpoC)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OF122_09290 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
ApbA_C
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UYQ73932
LinkDB
All DBs
Position
1862444..1866646
Genome browser
AA seq
1400 aa
AA seq
DB search
MNHHQHVMDPFNSQAAAPTFDQIKINIASPEKILSWSYGEIKKPETINYRTFKPERDGLF
CARIFGPTKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFL
KSLPSRISQLLDMTLKDVERILYFENYVVIEPGLTPFSQHQLVTEEEYLDAQDNYGPDAF
TAMIGAEAVREMLAALDLEKLAADLRVEIAEATTELKPKKLAKRLKIVEQFIVSGNKPEW
MIMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEK
RMLQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIT
VGPELKLHQCGLPKKMALELFKPFIYSRLDAKGLSSTVKQAKKLVEKEKPEVWDILDEVI
REHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QLEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMAEGEPGEGMAFASMSELEHA
LENKSVTLHTKIKGRIKAHDAEGNMTTSIIETTPGRMMLGQILPKTVPFEVVNQLMTKKN
ISKVIDTVYRACGQKETVIFCDRVMDLGFKQACRAGISFGKDDMVIPDTKAKIVGDTRKQ
VEEFEQQYNDGLITHGEKYNKVVDAWAKCGDKVAEEMMKRISAHEKDANGRSKQINSVYM
MSHSGARGSVAQMKQLAGMRGLMAKPSGEIIETPVISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIITEDDCGTERGLTMEPIIDSGQVVASLGQRILGRVA
ADDIMVPGTDEVLVAKGTLMDEADVERVEAAKVQSVRIRSPLTCDVRQGTCATCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDNSYLEAGAEGKITFRNKNI
ATNSDGHIVVMGRNVSIVIVDGEGKERSVHKLGYGSRLRVKEGDQVKRGQRLAEWDPYTR
PVLTEVEGEVIFEDLVDGASVSEQTDETTGFTKRLVIDWRSSQRGDGLKPAIAVGAQGQA
FKTERGSDARYLMSVDAVIAVEPGTRVAQGDVLARIPLESAKTKDITGGLPRVAELFEAR
RPKDHAIIAEVDGTIRFGRDYKNKRRIIIEPTDETLEPVEYLIPKGKPFHLQEGDPIEKG
EYILDGNPAPHDILAIKGVEELARYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEIT
EPGESGLLKEEQLDRIDLDELNEQLIADGKKPAVAVPVLLGITKASLQTRSFVSAASFQE
TTRVLTEAAVSGKADLLEGLKENVIVGRLIPAGTGARISNVRQIAAKRDDLILDERRRQA
ETVAIPAPEAMPAAPDSPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatcatcagcacgtcatggatccgttcaactcgcaggcggctgcgccgactttc
gatcagatcaagatcaatatcgcgagcccggaaaagatcctgtcgtggtcgtacggcgaa
atcaaaaagcccgagaccatcaactaccgtacgttcaagcccgagcgtgacggcctgttc
tgcgcgcgcatctttggcccgaccaaggattacgaatgcctgtgcggcaagtacaagcgc
atgaagttcaagggcgtcatctgcgaaaagtgcggcgtggaagtcaccctttcgcgcgtt
cgccgcgagcgcatgggccatatcgaactggctgcgccggttgcccatatctggttcctc
aagtccctgccgagccgcatttcgcagctgctcgacatgaccttgaaagatgtcgaacgc
attctctatttcgagaactacgtcgtcatcgaaccgggcctgaccccgttcagccagcat
cagctggtgacggaagaagagtatctcgacgcccaggacaattacggtcctgacgccttc
accgccatgatcggcgctgaagcggtgcgcgaaatgctggccgctctcgacctcgaaaaa
ctcgccgccgatctgcgcgtcgagatcgccgaggcgaccaccgagctcaagccgaaaaag
ctggccaagcgcctgaagatcgtcgagcagttcatcgtttcaggcaacaagcccgaatgg
atgatcatgacggtcatcccggtcattccgcccgaattgcgcccgctggttccgctcgat
ggcggccggttcgcgacttcggatctgaacgatctctatcgccgcgtcatcaaccgtaac
aaccgtctcaagcgcctgatcgaactgcgtgctcccgatatcattatccggaacgaaaaa
cgcatgctgcaggaagctgtggacgcgctgttcgacaacggccgccgtggccgcaccatc
accggtgcgaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggc
cggttccgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggttatcacc
gtgggtcccgaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactt
ttcaagcccttcatctattcgcgtctcgacgcgaagggcctgtcttcgaccgtcaagcag
gcgaaaaagctggttgaaaaggaaaagcccgaagtctgggatatccttgacgaagtgatc
cgtgagcacccggttcttctcaaccgcgcgccgacgcttcaccgtctgggcatccaggca
ttcgagccgatcctgatcgagggcaaggccatccagcttcacccgctggtctgtgccgcg
ttcaacgccgacttcgacggcgatcagatggccgttcacgtgccgctgtcgctcgaagcc
cagcttgaagcgcgcgtgttgatgatgtcgaccaacaacatcctgcacccggccaacggc
cagccgatcatcgtgccgagccaggatatcgtgctgggcctgtactatgtgtcgatcatg
gccgagggcgagcccggtgaaggcatggcgttcgcgtcgatgtccgaactcgagcacgcg
ctggagaacaagtcggtcacgctgcacaccaagatcaagggccggatcaaggctcatgat
gccgagggcaacatgacgacgtcgatcatcgagacgacgccgggccgcatgatgcttggg
cagatcctgcccaagaccgtgccgttcgaggtggtcaaccagctcatgaccaagaagaac
atctccaaggttatcgacacggtttaccgtgcctgtggccagaaggagaccgtgatcttc
tgtgaccgcgtcatggacctgggcttcaagcaagcctgccgcgccggcatttcgttcggc
aaggacgacatggtcatccccgacaccaaggccaagattgtgggcgatacccgcaagcag
gtcgaggagttcgagcagcagtacaatgacggcctgatcacccatggtgagaagtacaac
aaggtcgtcgatgcctgggccaagtgtggtgacaaggtcgccgaagagatgatgaaacgc
atctcggcgcacgaaaaggacgccaacggccgctccaagcagatcaactcggtctatatg
atgagccactccggcgcccgtggttcggtcgcccagatgaagcagctcgccggcatgcgc
ggccttatggccaagccgtcgggcgaaatcatcgaaacgccggtgatctcgaacttcaag
gaaggcctgaccgttctcgagtacttcaactcgacccacggtgcccgtaagggtctggcc
gacaccgcgctcaagacggcaaactcgggttacctgacccgccgtctcgtggacgtcgcc
caggatgccatcatcaccgaggacgattgcggcaccgaacgcggcctgaccatggaaccg
atcatcgattccggtcaggtggtcgcttcgctcggccagcgtattctgggccgtgtggca
gcggacgacatcatggttcccggcaccgacgaagttctcgtcgccaagggcaccctgatg
gacgaggccgatgtcgaacgggtcgaagccgccaaggttcagtcggtgcgcatccgctcg
ccgctgacctgcgatgttcgccagggcacctgtgcgacctgctatggccgtgaccttgct
cgcgggacgccggtcaacatgggtgaggctgtcggcgttatcgccgcccagtcgatcggt
gaaccgggcacccagctgaccatgcgtacgttccacatcggtggtacggcgcaggtggtg
gataactcgtatctcgaggccggtgccgaaggtaagatcacgttccgcaacaagaacatt
gcgaccaactccgatggccacatcgtggtcatgggccgcaacgtttcgatcgtgatcgtc
gatggcgaaggcaaggaacgctcggtccacaagctcggctatggctcacgcctgcgggtc
aaggagggcgatcaggtcaagcgtggccagcgtctggcggaatgggatccctatacccgt
cccgttctgaccgaagtggaaggcgaagtgattttcgaggatctggtcgatggggcttcg
gtctccgaacagactgacgaaaccacgggctttaccaagcgtctggtcatcgactggcgg
tccagccagcgcggtgacggcctcaagcctgccatcgctgtcggtgcgcagggccaggcc
ttcaagaccgagcgtggttcggatgcgcggtacctgatgagcgtggatgcggtcatcgcc
gtcgagccagggacacgcgttgcccagggtgacgttctggcccgtattccgctcgaaagc
gccaagaccaaggacatcaccggcggtctgccgcgtgtggccgaactgttcgaggctcgt
cgtcccaaggatcacgcgatcattgccgaagtcgacggcacgatccgcttcggacgcgac
tacaagaacaagcgccgcatcatcatcgagccgaccgacgagactctcgagcctgtcgag
tatctcatcccgaagggcaagcctttccatcttcaggaaggcgacccgatcgagaagggc
gaatacattctggacggcaacccggccccccacgacatccttgcgatcaagggcgtcgag
gagctggcacgctatctcgtcaacgagatccaggaggtctatcgcctgcagggcgtgctg
atcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatcacc
gagcccggcgaatccggtctgctcaaggaagagcagcttgaccggatcgatctggacgaa
ctcaacgagcagctcattgccgatggcaagaagcccgcagtggccgttccggtcctgctc
ggcatcaccaaggcatcgctgcagacccgttcgttcgtgtcggccgcctcgttccaggaa
accacacgcgtcctcaccgaggctgcggtttcaggcaaggcggatctgctcgaaggtctc
aaggaaaacgtcatcgttggccgtctcatcccggcgggcacgggtgcgcgtatttccaac
gtgcgccagatcgcggccaagcgcgacgatctcattctggacgagcggcgccgtcaggcc
gaaacggttgccattccggcacccgaggcgatgcctgccgcaccggactcgccagccgag
taa
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integrated database retrieval system
